Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT1G19530.1 | KRH58580 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 82.07 | 86.86 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 64.83 | 65.28 |
| KRH61149 | Soybean | nucleus | 64.14 | 64.58 |
| KRH51839 | Soybean | cytosol | 61.38 | 64.03 |
| KRG99145 | Soybean | cytosol | 42.07 | 51.69 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 50.34 | 49.66 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane, plastid | 21.38 | 46.97 |
| PGSC0003DMT400009462 | Potato | cytosol | 43.45 | 44.68 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 33.79 | 44.14 |
| AT1G19530.1 | Thale cress | nucleus | 35.17 | 43.59 |
| Solyc04g080540.2.1 | Tomato | cytosol | 42.07 | 43.26 |
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 33.1 | 43.24 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 37.24 | 42.86 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 33.79 | 41.88 |
| PGSC0003DMT400013741 | Potato | nucleus | 31.72 | 39.32 |
| HORVU5Hr1G115250.2 | Barley | nucleus | 30.34 | 35.48 |
| TraesCS5B01G503400.1 | Wheat | nucleus | 31.03 | 34.09 |
| TraesCS4A01G369300.1 | Wheat | cytosol | 31.03 | 33.58 |
| TraesCS5D01G504200.1 | Wheat | cytosol | 32.41 | 33.1 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 30.34 | 32.12 |
| TraesCS5B01G503700.1 | Wheat | nucleus | 28.28 | 31.78 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 28.97 | 31.58 |
| EER93164 | Sorghum | nucleus | 32.41 | 31.54 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 27.59 | 31.5 |
| Os03t0826800-01 | Rice | plasma membrane | 30.34 | 30.77 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 28.28 | 30.37 |
| TraesCS5D01G504500.1 | Wheat | nucleus | 28.28 | 30.15 |
| Zm00001d012920_P001 | Maize | plastid | 27.59 | 29.85 |
| GSMUA_Achr11P... | Banana | nucleus | 33.1 | 27.91 |
| EER90597 | Sorghum | plastid | 28.97 | 22.11 |
Protein Annotations
| EMBL:ACUP02010781 | EnsemblPlants:KRH05842 | EnsemblPlantsGene:GLYMA_17G251800 | EntrezGene:100798264 | PANTHER:PTHR33872 | PANTHER:PTHR33872:SF2 |
| ProteinID:KRH05842 | ProteinID:KRH05842.1 | UniParc:UPI000233E963 | UniProt:I1MXX3 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr17:+:40633291..40635780
Molecular Weight (calculated)
16517.5 Da
IEP (calculated)
9.885
GRAVY (calculated)
-0.782
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMAGWYS THMDPQSATL KRNRSLTKDE IDAYWKSKKK IEEEHLRAIS NVSETIQASK NTEPEKKLQK SMTMPVTRAR DYLNMVDIDT SLEQLIKRNG
101: WWTKSSWAFL NEPPVTEAAS NKYASQFHVA SMGSSKFNPR DGISA
101: WWTKSSWAFL NEPPVTEAAS NKYASQFHVA SMGSSKFNPR DGISA
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.