Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT1G19530.1 | KRH58580 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61149 | Soybean | nucleus | 67.8 | 55.56 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 63.56 | 52.08 |
| KRH51839 | Soybean | cytosol | 55.93 | 47.48 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 49.15 | 42.34 |
| KRH05842 | Soybean | nucleus | 51.69 | 42.07 |
| PGSC0003DMT400009462 | Potato | cytosol | 37.29 | 31.21 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 37.29 | 29.93 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 27.12 | 28.83 |
| Solyc04g080540.2.1 | Tomato | cytosol | 33.9 | 28.37 |
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 26.27 | 27.93 |
| AT1G19530.1 | Thale cress | nucleus | 27.12 | 27.35 |
| PGSC0003DMT400013741 | Potato | nucleus | 27.12 | 27.35 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 26.27 | 26.5 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 26.27 | 24.6 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane, plastid | 12.71 | 22.73 |
| HORVU5Hr1G115250.2 | Barley | nucleus | 22.88 | 21.77 |
| TraesCS5B01G503400.1 | Wheat | nucleus | 23.73 | 21.21 |
| TraesCS4A01G369300.1 | Wheat | cytosol | 23.73 | 20.9 |
| EER93164 | Sorghum | nucleus | 25.42 | 20.13 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 22.88 | 19.71 |
| TraesCS5B01G503700.1 | Wheat | nucleus | 21.19 | 19.38 |
| TraesCS5D01G504200.1 | Wheat | cytosol | 22.88 | 19.01 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 20.34 | 18.9 |
| Os03t0826800-01 | Rice | plasma membrane | 22.88 | 18.88 |
| Zm00001d012920_P001 | Maize | plastid | 21.19 | 18.66 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 19.49 | 17.04 |
| GSMUA_Achr11P... | Banana | nucleus | 22.88 | 15.7 |
| TraesCS5D01G504500.1 | Wheat | nucleus | 17.8 | 15.44 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 16.1 | 14.29 |
| EER90597 | Sorghum | plastid | 22.03 | 13.68 |
Protein Annotations
| EMBL:ACUP02010978 | EnsemblPlants:KRG99145 | EnsemblPlantsGene:GLYMA_18G124300 | PANTHER:PTHR33872 | PANTHER:PTHR33872:SF2 | ProteinID:KRG99145 |
| ProteinID:KRG99145.1 | UniParc:UPI0006EE05A1 | UniProt:A0A0R0EZF6 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr18:+:16216168..16216762
Molecular Weight (calculated)
13430.9 Da
IEP (calculated)
5.814
GRAVY (calculated)
-0.608
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKFVIVAA TIERNRSLTK EEINAYWRVK KESELEHLRA MSKLSETIQA QKIEDSENSH KSSTVTLASI KESLGMDVDQ KSLEQLIKKN GCWAFLNEPP
101: VIEAASNKYA SEFQKIQG
101: VIEAASNKYA SEFQKIQG
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.