Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT1G19530.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 99.1 | 99.1 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 95.5 | 90.6 |
| AT1G19530.1 | Thale cress | nucleus | 70.27 | 66.67 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane, plastid | 31.53 | 53.03 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 45.05 | 39.68 |
| KRH51839 | Soybean | cytosol | 47.75 | 38.13 |
| PGSC0003DMT400009462 | Potato | cytosol | 47.75 | 37.59 |
| Solyc04g080540.2.1 | Tomato | cytosol | 47.75 | 37.59 |
| TraesCS4A01G369300.1 | Wheat | cytosol | 43.24 | 35.82 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 44.14 | 35.77 |
| HORVU5Hr1G115250.2 | Barley | nucleus | 39.64 | 35.48 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 45.95 | 35.42 |
| Os03t0826800-01 | Rice | plasma membrane | 45.05 | 34.97 |
| TraesCS5B01G503400.1 | Wheat | nucleus | 41.44 | 34.85 |
| KRH61149 | Soybean | nucleus | 44.14 | 34.03 |
| KRH05842 | Soybean | nucleus | 44.14 | 33.79 |
| PGSC0003DMT400013741 | Potato | nucleus | 35.14 | 33.33 |
| TraesCS5D01G504200.1 | Wheat | cytosol | 42.34 | 33.1 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 36.94 | 32.28 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 39.64 | 32.12 |
| EER93164 | Sorghum | nucleus | 40.54 | 30.2 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 39.64 | 29.93 |
| TraesCS5B01G503700.1 | Wheat | nucleus | 31.53 | 27.13 |
| KRG99145 | Soybean | cytosol | 28.83 | 27.12 |
| Zm00001d012920_P001 | Maize | plastid | 32.43 | 26.87 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 30.63 | 25.56 |
| GSMUA_Achr11P... | Banana | nucleus | 38.74 | 25.0 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 29.73 | 24.44 |
| TraesCS5D01G504500.1 | Wheat | nucleus | 29.73 | 24.26 |
| EER90597 | Sorghum | plastid | 33.33 | 19.47 |
Protein Annotations
| EnsemblPlants:CDY29422 | EnsemblPlantsGene:GSBRNA2T00043019001 | PANTHER:PTHR33872 | PANTHER:PTHR33872:SF2 | ProteinID:CDY29422 | ProteinID:CDY29422.1 |
| SEG:seg | UniParc:UPI0004EEDEB9 | UniProt:A0A078GWA9 | MapMan:35.2 | : | : |
Description
BnaA06g13740DBnaA06g13740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWA9]
Coordinates
chrLK032236:-:427471..428617
Molecular Weight (calculated)
12793.8 Da
IEP (calculated)
5.781
GRAVY (calculated)
-1.022
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMSGWDS PTKDPNSVRR CKSLTREEID AFWKTKKKTE EEHVQAVSNL VVQEVAESQG IEDPYENQSK TTGWWKRSNW AFLNEPREEE GRPNNYVPQF
101: QVAHIAKIAG Q
101: QVAHIAKIAG Q
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.