Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| OQU92006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | OQU92006 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012920_P001 | Maize | plastid | 36.84 | 52.24 |
| HORVU5Hr1G115250.2 | Barley | nucleus | 31.05 | 47.58 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 31.58 | 43.8 |
| EER93164 | Sorghum | nucleus | 33.68 | 42.95 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 30.0 | 42.86 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 28.42 | 42.52 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 28.95 | 40.74 |
| TraesCS5B01G503700.1 | Wheat | nucleus | 27.37 | 40.31 |
| TraesCS5D01G504500.1 | Wheat | nucleus | 27.89 | 38.97 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 19.47 | 33.33 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 22.11 | 33.33 |
| AT1G19530.1 | Thale cress | nucleus | 20.0 | 32.48 |
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 18.95 | 32.43 |
| Solyc04g080540.2.1 | Tomato | cytosol | 23.68 | 31.91 |
| KRH51839 | Soybean | cytosol | 22.63 | 30.94 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 18.95 | 30.77 |
| KRH61149 | Soybean | nucleus | 23.16 | 30.56 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 21.58 | 29.93 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 22.63 | 29.86 |
| PGSC0003DMT400009462 | Potato | cytosol | 22.11 | 29.79 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 22.63 | 29.25 |
| KRH05842 | Soybean | nucleus | 22.11 | 28.97 |
| PGSC0003DMT400013741 | Potato | nucleus | 17.37 | 28.21 |
| GSMUA_Achr11P... | Banana | nucleus | 24.21 | 26.74 |
| KRG99145 | Soybean | cytosol | 13.68 | 22.03 |
Protein Annotations
| EnsemblPlants:EER90597 | EnsemblPlantsGene:SORBI_3001G028600 | EntrezGene:8080213 | PANTHER:PTHR33872 | ProteinID:EER90597 | ProteinID:EER90597.1 |
| RefSeq:XP_002463599.1 | SEG:seg | UniParc:UPI0001A81F1E | UniProt:C5WU35 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr1:+:2247054..2248954
Molecular Weight (calculated)
20454.9 Da
IEP (calculated)
8.916
GRAVY (calculated)
-0.551
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMSGWSS SVLSDKEVRL MRNRSLTKDE VAAFWRRQQQ QGRPAAPEPN AGSPGAEILV PHAANKRQLE ATRSLPPLLA GRGATRSNDD DLTCCAAYGR
101: YGAGDQQLVS SRSEPPSPAA TARGEGFFLP VPENAAAADS SGMSRGWWTR SSWAFLNEPP PTREEVVLGR AQRSFACDQF HAARIVTGNA
101: YGAGDQQLVS SRSEPPSPAA TARGEGFFLP VPENAAAADS SGMSRGWWTR SSWAFLNEPP PTREEVVLGR AQRSFACDQF HAARIVTGNA
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.