Factsheet for PGSC0003DMT400016546

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016547	Potato	extracellular	85.37	91.84
Solyc12g017460.1.1	Tomato	extracellular	90.51	90.51
PGSC0003DMT400016545	Potato	plastid	77.78	88.85
PGSC0003DMT400075261	Potato	cytosol	51.49	54.13
PGSC0003DMT400048871	Potato	extracellular	40.92	40.7
PGSC0003DMT400063639	Potato	cytosol	39.84	40.61
PGSC0003DMT400063633	Potato	cytosol	26.83	39.6
PGSC0003DMT400067663	Potato	extracellular	39.3	38.46
PGSC0003DMT400011185	Potato	endoplasmic reticulum, extracellular, vacuole	38.75	37.34
PGSC0003DMT400026549	Potato	extracellular, vacuole	38.75	35.75
PGSC0003DMT400034313	Potato	cytosol	30.08	35.58
PGSC0003DMT400011187	Potato	plasma membrane	35.77	35.48
PGSC0003DMT400034315	Potato	cytosol	30.89	31.15
PGSC0003DMT400034309	Potato	cytosol, nucleus, plasma membrane	30.35	23.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400016546	EnsemblPlantsGene:PGSC0003DMG400006462	EntrezGene:102584051	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like
PANTHER:PTHR22835	PANTHER:PTHR22835:SF298	PFAM:PF00657	PGSC:PGSC0003DMG400006462	RefSeq:XP_015163115.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF52266	UniParc:UPI000296CC12	UniProt:M1A7U4	MapMan:35.1	:

Description

GDSL-like Lipase/Acylhydrolase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006462]

Coordinates

chr12:-:11154584..11155938

Molecular Weight (calculated)

41117.0 Da

IEP (calculated)

9.101

GRAVY (calculated)

-0.041

Length

369 amino acids

Sequence
(BLAST)

001: MATLSLTQFS LSLLFITLFF FSPSSAQTKC NVNSVYQLGD SLADAGNVIR TPGASIIFRS DRSPYGETFF RRPTGRFSNG RVITDFISQS FKLSFLNAYL
101: DRGASFTQGV NFAVAGATAL DTSFWTARNI RLPTWNTPLS NQLNWFKTHL QSTCGSRCAE NLKNSRVIMG EWGGNDYYNC FFQRKQITEV RTYVPFVVAG
201: IMKGIKEVIQ LGATRVLVPS IYPLGCLPLY LTSFPENNTS GYDQLGCLRN FNDFASYHNR YVVRALANLQ REFPNVRIVY GDFYGATLSL IRNPSSFGFN
301: QNTLLSACCG TGGRHNFNFG TVCGAAGINA CSNPAQYVHW DGIHLTDEAH RRITEVLVKD MLAKFNCVV

Best Arabidopsis Sequence Match ( AT1G28590.1 )
(BLAST)

001: MASLDSLPAM KLVRFILSTL LVTSVNSQTQ CRNFKSIISF GDSIADTGNL LGLSDPNDLP ASAFPPYGET FFHHPTGRYS DGRLIIDFIA EFLGFPLVPP
101: FYGCQNANFK KGVNFAVAGA TALEPSFLEE RGIHSTITNV SLSVQLRSFT ESLPNLCGSP SDCRDMIENA LILMGEIGGN DYNFALFQRK PVKEVEELVP
201: FVIATISSAI TELVCMGGRT FLVPGNFPIG YSASYLTLYK TSNKEEYDPL TGCLKWLNDF SEYYNKQLQE ELNGLRKLYP HVNIIYADYY NALLRLFQEP
301: AKFGFMNRPL PACCGVGGSY NFNFSRRCGS VGVEYCDDPS QYVNYDGIHM TEAAYRLISE GLLKGPYAIP PFKWSCLSSE IMNKMSLDTQ ILDEQLLQGC
401: LKV

Arabidopsis Description

GDSL esterase/lipase At1g28590 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXT9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.