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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 7
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:vacuole
 nucleus: 25464976
nucleus: 28394025
extracellular: 28847647
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 28847647 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA. Electronic address: jabadia@eead.csic.es.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400016546 Potato endoplasmic reticulum, vacuole 90.51 90.51
PGSC0003DMT400016547 Potato extracellular 81.3 87.46
PGSC0003DMT400016545 Potato plastid 75.61 86.38
Solyc12g096620.1.1 Tomato nucleus 54.2 52.63
Solyc01g099010.2.1 Tomato extracellular 40.92 40.27
Solyc01g099040.2.1 Tomato extracellular 41.19 40.0
Solyc01g099060.1.1 Tomato extracellular 40.11 38.95
Solyc01g099030.2.1 Tomato extracellular 39.3 38.67
Solyc01g099050.2.1 Tomato extracellular, golgi, vacuole 38.75 37.93
Solyc03g006250.2.1 Tomato extracellular 38.75 37.63
Solyc01g099020.2.1 Tomato nucleus 38.21 37.11
Solyc10g008720.2.1 Tomato extracellular 37.94 36.08
Solyc03g006240.2.1 Tomato nucleus 35.5 35.6
Solyc10g008710.2.1 Tomato extracellular 35.23 34.39
Solyc02g077120.2.1 Tomato cytosol 19.78 34.27
Protein Annotations
EnsemblPlants:Solyc12g017460.1.1EnsemblPlantsGene:Solyc12g017460.1Gene3D:3.40.50.1110GO:GO:0003674GO:GO:0003824GO:GO:0016787
GO:GO:0016788InterPro:GDSLInterPro:IPR036514InterPro:SGNH_hydro_sfInterPro:SGNH_plant_lipase_likePANTHER:PTHR22835
PANTHER:PTHR22835:SF298PFAM:PF00657SEG:segSignalP:SignalP-noTMSUPFAM:SSF52266UniParc:UPI0002769410
UniProt:K4DD79MapMan:35.1::::
Description
No Description!
Coordinates
chr12:-:6720509..6721618
Molecular Weight (calculated)
40859.8 Da
IEP (calculated)
9.362
GRAVY (calculated)
0.019
Length
369 amino acids
Sequence
(BLAST)
001: MATFSLTKVS LSVLLVSLFF FSPSSAQTKC NVNSVYQLGD SLADAGNVIR TPGASIIFRA DRSPYGETFF RKPTGRFSNG RVITDFISQS FKLPFLNAYL
101: DRTASFSQGV NFAVAGATAL DTSFWTARNI RLPTWNTPLS NQLTWFKSHL KSTCGSKCAE NLKNSIVIMG EWGGNDYYNC FFQRKQISEV RSYVPFVVAG
201: IMRGIKEVIQ LGATRVLVPS IYPLGCLPLY LTSFPDNNTS GYDQLGCLKS FNDFASYHNR FVVRAMANLQ RQFPNVSIVY GDFYGSILSL IRNPSSFGFN
301: QNTLLSACCG TGGTHNFNFR TVCGGAGINA CSNPAKYVHW DGIHLTDEAH RRISEVLVRD MLAKFNCVV
Best Arabidopsis Sequence Match ( AT1G28590.1 )
(BLAST)
001: MASLDSLPAM KLVRFILSTL LVTSVNSQTQ CRNFKSIISF GDSIADTGNL LGLSDPNDLP ASAFPPYGET FFHHPTGRYS DGRLIIDFIA EFLGFPLVPP
101: FYGCQNANFK KGVNFAVAGA TALEPSFLEE RGIHSTITNV SLSVQLRSFT ESLPNLCGSP SDCRDMIENA LILMGEIGGN DYNFALFQRK PVKEVEELVP
201: FVIATISSAI TELVCMGGRT FLVPGNFPIG YSASYLTLYK TSNKEEYDPL TGCLKWLNDF SEYYNKQLQE ELNGLRKLYP HVNIIYADYY NALLRLFQEP
301: AKFGFMNRPL PACCGVGGSY NFNFSRRCGS VGVEYCDDPS QYVNYDGIHM TEAAYRLISE GLLKGPYAIP PFKWSCLSSE IMNKMSLDTQ ILDEQLLQGC
401: LKV
Arabidopsis Description
GDSL esterase/lipase At1g28590 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXT9]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.