Factsheet for PGSC0003DMT400016547

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016546	Potato	endoplasmic reticulum, vacuole	91.84	85.37
Solyc12g017460.1.1	Tomato	extracellular	87.46	81.3
PGSC0003DMT400016545	Potato	plastid	74.34	78.95
PGSC0003DMT400075261	Potato	cytosol	49.27	48.15
PGSC0003DMT400063639	Potato	cytosol	41.11	38.95
PGSC0003DMT400048871	Potato	extracellular	40.23	37.2
PGSC0003DMT400067663	Potato	extracellular	39.65	36.07
PGSC0003DMT400063633	Potato	cytosol	26.24	36.0
PGSC0003DMT400011185	Potato	endoplasmic reticulum, extracellular, vacuole	38.78	34.73
PGSC0003DMT400034313	Potato	cytosol	30.32	33.33
PGSC0003DMT400011187	Potato	plasma membrane	35.86	33.06
PGSC0003DMT400026549	Potato	extracellular, vacuole	37.03	31.75
PGSC0003DMT400034315	Potato	cytosol	31.49	29.51
PGSC0003DMT400034309	Potato	cytosol, nucleus, plasma membrane	30.9	22.27

Protein Annotations

EnsemblPlants:PGSC0003DMT400016547	EnsemblPlantsGene:PGSC0003DMG400006463	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	PANTHER:PTHR22835
PANTHER:PTHR22835:SF298	PFAM:PF00657	PGSC:PGSC0003DMG400006463	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52266
UniParc:UPI000295559A	UniProt:M1A7U5	MapMan:35.1	:	:	:

Description

GDSL-like Lipase/Acylhydrolase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006463]

Coordinates

chr12:-:11206697..11207806

Molecular Weight (calculated)

38371.9 Da

IEP (calculated)

8.999

GRAVY (calculated)

-0.012

Length

343 amino acids

Sequence
(BLAST)

001: MATLSLTQFS LTLLLITSFF FSPSSAQTKC NVNSVYQLGD SLADTGNLIR IPGASIIFRA DRSPYGETFF RRPTGRFSNG RLITDFISQS FKLSFLNAYL
101: DRGASFTQGV NFAVAGATIL DTSFWTARNI QLPTWNSPLS NQLNWFKRHL QSTCGSRCAE NLKKSIVIMG EWGGNDYYNC FSQRKQITEV RTYVPFVVAE
201: IMRGIKEVIQ LGATRVLVPR CLRNFNDFAS YHNRYVVRAI ANLQREFPNV SIVYGDFYGV ILSLICNPSS FEFNQNTLLS ACCGTGGKHN FNSRTVCGAA
301: GINACSNPAQ YVHWDGIHLT DEAHRRITEV LVPDMLAKFN CVV

Best Arabidopsis Sequence Match ( AT1G28580.1 )
(BLAST)

001: MAYPGSPILM KLLVFIFLST FVVTNVSSET KCREFKSIIS FGDSIADTGN LLGLSDPKDL PHMAFPPYGE NFFHHPTGRF SNGRLIIDFI AEFLGLPLVP
101: PFYGSHNANF EKGVNFAVGG ATALERSFLE DRGIHFPYTN VSLGVQLNSF KESLPSICGS PSDCRDMIEN ALILMGEIGG NDYNYAFFVD KGIEEIKELM
201: PLVITTISSA ITELIGMGGR TFLVPGEFPV GCSVLYLTSH QTSNMEEYDP LTGCLKWLNK FGENHGEQLR AELNRLQKLY PHVNIIYADY YNALFHLYQE
301: PAKFGFMNRP LSACCGAGGP YNYTVGRKCG TDIVESCDDP SKYVAWDGVH MTEAAYRLMA EGILNGPYAI PPFDWSCRSS GVKNSGSSDT

Arabidopsis Description

GDSL esterase/lipase At1g28580 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXJ2]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.