Factsheet for PGSC0003DMT400075261

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096620.1.1	Tomato	nucleus	84.05	77.63
PGSC0003DMT400016546	Potato	endoplasmic reticulum, vacuole	54.13	51.49
PGSC0003DMT400016545	Potato	plastid	46.72	50.77
PGSC0003DMT400016547	Potato	extracellular	48.15	49.27
PGSC0003DMT400063633	Potato	cytosol	26.78	37.6
PGSC0003DMT400011185	Potato	endoplasmic reticulum, extracellular, vacuole	40.74	37.34
PGSC0003DMT400063639	Potato	cytosol	37.32	36.19
PGSC0003DMT400067663	Potato	extracellular	38.46	35.81
PGSC0003DMT400048871	Potato	extracellular	37.32	35.31
PGSC0003DMT400026549	Potato	extracellular, vacuole	39.89	35.0
PGSC0003DMT400011187	Potato	plasma membrane	36.75	34.68
PGSC0003DMT400034313	Potato	cytosol	29.91	33.65
PGSC0003DMT400034315	Potato	cytosol	29.63	28.42
PGSC0003DMT400034309	Potato	cytosol, nucleus, plasma membrane	29.91	22.06

Protein Annotations

EnsemblPlants:PGSC0003DMT400075261	EnsemblPlantsGene:PGSC0003DMG400029272	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	PANTHER:PTHR22835
PANTHER:PTHR22835:SF298	PFAM:PF00657	PGSC:PGSC0003DMG400029272	UniParc:UPI000295BCC1	UniProt:M1CUU7	MapMan:35.1

Description

GDSL-like Lipase/Acylhydrolase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029272]

Coordinates

chr12:-:58220707..58224106

Molecular Weight (calculated)

38335.7 Da

IEP (calculated)

7.838

GRAVY (calculated)

-0.025

Length

351 amino acids

Sequence
(BLAST)

001: MVKMEATKFG DSLADAGNVI RIPGAVTSAQ AWGLPYGETF FHKPTGRFTD GRIITDYIAS ALNLPFVNAY LDKSGVSFSQ GANFAVAGAT AMNNSFLVEK
101: GIGFIKFNVP LPSQLEWFKS HLQSTCGSKC ARTLRNSLIV LGEFGGVDYW NAFAGAGTKS EPEVRTYVPL IIDGIMSAIK DVIQLGSTRI LVPGVLPFGC
201: LSTYLTRFPD TNPDAYDQFG CLKSYNKFAM YHNTELKKAL ENLQCEFPRV KIVYGDYYGG FRFIFRYANW LGFNPNTLVS ACCGSGGRYN TDGGCTGTST
301: NVCPNPSQYV NWDGLHLTDE AYHRISDVVI NNMLPKFGCC GLGNSSVLSS Y

Best Arabidopsis Sequence Match ( AT1G28650.1 )
(BLAST)

001: MTTTLLMASL IVSFLLILYY TTIVVASSES RCRRYKSIIS FGDSIADTGN YVHLSNVNNL PQAAFLPYGE SFFHPPSGRY SDGRLVIDFI AEFLGLPYVP
101: PYFGSQNVSF NQGINFAVYG ATALDRAFLV KQGIKSDFTN ISLSVQLNTF KQILPNLCAS STRDCREMLG DSLILMGEIG GNDYNYPFFE GKSINEIKEL
201: VPLIIKAISS AIVDLIDLGG KTFLVPGNFP IGCSTAYLTL FQTATVEHDP FTGCIPWLNK FGEHHNEQLK IELKQLQKLY PHVNIIYADY YNSLYGLFQE
301: PAKYGFKNRP LAACCGVGGQ YNFTIGKECG ENGVSYCQNP SEYVNWDGYH LTEATYQKMA QGLLNGRYTT PAFDWSCLGS YDFSG

Arabidopsis Description

GDSL esterase/lipase At1g28650 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7I6]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.