Factsheet for PGSC0003DMT400034313

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
plasma membrane 2
cytosol 2
extracellular 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099040.2.1	Tomato	extracellular	76.6	62.89
PGSC0003DMT400063633	Potato	cytosol	49.68	62.0
PGSC0003DMT400063639	Potato	cytosol	54.81	47.24
PGSC0003DMT400048871	Potato	extracellular	55.45	46.63
PGSC0003DMT400034315	Potato	cytosol	53.53	45.63
PGSC0003DMT400067663	Potato	extracellular	55.13	45.62
VIT_14s0060g02080.t01	Wine grape	endoplasmic reticulum, vacuole	45.83	38.24
Bra009496.1-P	Field mustard	extracellular	41.67	35.42
TraesCS3A01G308200.1	Wheat	extracellular, golgi	40.38	33.87
TraesCS3D01G134200.1	Wheat	extracellular, plasma membrane	40.06	33.6
TraesCS3B01G151300.1	Wheat	extracellular, vacuole	40.06	33.51
HORVU3Hr1G024970.12	Barley	endoplasmic reticulum, vacuole	40.38	33.42
AT5G03980.1	Thale cress	vacuole	34.29	33.13
Os11t0521000-01	Rice	plasma membrane	39.42	32.98
CDY41414	Canola	vacuole	34.62	32.93
CDX70269	Canola	extracellular	34.29	32.62
GSMUA_Achr11P...	Banana	extracellular	38.46	32.09
PGSC0003DMT400011187	Potato	plasma membrane	38.14	31.99
PGSC0003DMT400034309	Potato	cytosol, nucleus, plasma membrane	48.4	31.72
PGSC0003DMT400016547	Potato	extracellular	33.33	30.32
HORVU6Hr1G053960.1	Barley	vacuole	38.14	30.2
PGSC0003DMT400016546	Potato	endoplasmic reticulum, vacuole	35.58	30.08
PGSC0003DMT400075261	Potato	cytosol	33.65	29.91
TraesCS6B01G240600.1	Wheat	vacuole	37.18	29.59
OQU85266	Sorghum	extracellular	37.82	29.57
TraesCS7B01G329000.1	Wheat	extracellular	34.94	29.46
EES09797	Sorghum	plasma membrane	36.54	29.46
TraesCS7D01G421100.1	Wheat	endoplasmic reticulum, extracellular	34.29	29.4
Os02t0608801-00	Rice	extracellular	37.82	29.28
TraesCS7D01G421200.1	Wheat	endoplasmic reticulum, extracellular	35.26	29.18
TraesCS1D01G250200.1	Wheat	extracellular, vacuole	38.14	29.17
PGSC0003DMT400016545	Potato	plastid	30.13	29.1
TraesCS7A01G428800.1	Wheat	extracellular	33.97	28.65
KXG30582	Sorghum	vacuole	35.9	28.57
TraesCS6D01G194200.1	Wheat	vacuole	36.54	28.57
TraesCS7A01G429100.2	Wheat	extracellular	34.29	28.53
PGSC0003DMT400011185	Potato	endoplasmic reticulum, extracellular, vacuole	34.94	28.46
TraesCS7A01G430000.1	Wheat	extracellular	34.29	28.46
TraesCS7D01G421900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	34.29	28.38
TraesCS6A01G211100.1	Wheat	extracellular, plasma membrane, vacuole	36.22	28.32
TraesCS7B01G329200.1	Wheat	extracellular	33.97	28.27
Zm00001d017140_P001	Maize	endoplasmic reticulum, extracellular	36.54	28.01
Os06t0694200-01	Rice	extracellular	33.97	27.97
TraesCS1A01G250600.1	Wheat	endoplasmic reticulum	36.22	27.83
HORVU1Hr1G061910.1	Barley	endoplasmic reticulum, golgi, mitochondrion	36.86	27.78
TraesCS1B01G261200.1	Wheat	endoplasmic reticulum, mitochondrion, vacuole	35.9	27.52
Zm00001d007351_P001	Maize	plasma membrane	36.54	27.08
PGSC0003DMT400026549	Potato	extracellular, vacuole	34.29	26.75
EES05386	Sorghum	extracellular, vacuole	35.58	26.37
Zm00001d014596_P001	Maize	endoplasmic reticulum, vacuole	33.97	26.3
HORVU7Hr1G098600.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	33.97	25.6
Os02t0604000-00	Rice	extracellular	33.01	25.37
KXG20727	Sorghum	endoplasmic reticulum, extracellular, vacuole	33.97	25.18
TraesCS7B01G329900.1	Wheat	extracellular	33.97	24.2
HORVU7Hr1G098580.5	Barley	mitochondrion	22.76	17.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400034313	EnsemblPlantsGene:PGSC0003DMG400013194	Gene3D:3.40.50.1110	InterPro:IPR036514	InterPro:SGNH_hydro_sf	PANTHER:PTHR22835
PANTHER:PTHR22835:SF289	PGSC:PGSC0003DMG400013194	UniParc:UPI000294DE1F	UniProt:M1B0G9	MapMan:35.1	:

Description

Alpha-L-fucosidase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400013194]

Coordinates

chr1:-:76790764..76792650

Molecular Weight (calculated)

35404.6 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.164

Length

312 amino acids

Sequence
(BLAST)

001: MKKCGINRIY QFGDSLSDTG NCLRETYCRA HSGCRFPPYG MNFYQKAVTG RCSNGLLMID FIALECGLPL LNPSLEENAD FSHGANFAVS GATALSVESL
101: AKKKIHMSYT NSTLSVQLQW MSSHFNSVCS TDCPKYLENS LFLVGEIGGD ELTYGLNQGK TMEELRRMVP DIVHAIIRGV RRVISFGATR IVVPGNIPAG
201: CNPVILTIFG TRPSTTYDEY GCVKEWNNFI MYYNNYLKRG IHMLKREYPN ISIIYGDYYS AYLWLRQNVV ALVYVVQDYK HFGFIVWKSY CPTNSSIYVV
301: VREGKKREEK DE

Best Arabidopsis Sequence Match ( AT1G28570.1 )
(BLAST)

001: MATLFMKLVS FFLILSTFCL TTVNSEPQCH NFKSIISFGD SIADTGNLLA LSDPTNLPKV AFLPYGETFF HHPTGRFSNG RLIIDFIAEF LGFPLVPPFY
101: GSQNANFEKG VNFAVGGATA LERSFLEERG IHFPYTNVSL AVQLSSFKES LPNLCVSPSD CRDMIENSLI LMGEIGGNDY NYAFFVGKNI EEIKELVPLV
201: IETISSAITE LIGMGGKTFL VPGEFPLGCS VAYLSLYQTS NIEEYDPLTG CLKWLNKFSE YHDEQLQAEL NRLQKLYPHV NIIYADYYNT LLRLAQEPAK
301: FGFISRPLPA CCALGGPFNF TLGRKRGTQV PECCDDPSKY VSWDGVHMTE AAYRLMAEGI LKGPYAIPPF DWSCLSSEIK NTQNSLMNN

Arabidopsis Description

GDSL esterase/lipase At1g28570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXJ1]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.