Factsheet for PGSC0003DMT400034309

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063633	Potato	cytosol	36.76	70.0
Solyc01g099030.2.1	Tomato	extracellular	49.58	62.93
PGSC0003DMT400048871	Potato	extracellular	44.33	56.87
PGSC0003DMT400063639	Potato	cytosol	39.71	52.21
PGSC0003DMT400034315	Potato	cytosol	38.24	49.73
PGSC0003DMT400067663	Potato	extracellular	39.29	49.6
PGSC0003DMT400034313	Potato	cytosol	31.72	48.4
VIT_14s0060g02080.t01	Wine grape	endoplasmic reticulum, vacuole	29.2	37.17
TraesCS3A01G308200.1	Wheat	extracellular, golgi	27.94	35.75
TraesCS3B01G151300.1	Wheat	extracellular, vacuole	27.94	35.66
TraesCS3D01G134200.1	Wheat	extracellular, plasma membrane	27.73	35.48
HORVU3Hr1G024970.12	Barley	endoplasmic reticulum, vacuole	27.52	34.75
Bra009496.1-P	Field mustard	extracellular	26.05	33.79
PGSC0003DMT400016545	Potato	plastid	22.69	33.44
Os11t0521000-01	Rice	plasma membrane	26.05	33.24
GSMUA_Achr11P...	Banana	extracellular	25.84	32.89
EES09797	Sorghum	plasma membrane	26.47	32.56
TraesCS7D01G421100.1	Wheat	endoplasmic reticulum, extracellular	24.58	32.14
CDY41414	Canola	vacuole	21.85	31.71
CDX70269	Canola	extracellular	21.85	31.71
TraesCS7A01G430000.1	Wheat	extracellular	24.79	31.38
TraesCS7D01G421900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	24.79	31.3
TraesCS7D01G421200.1	Wheat	endoplasmic reticulum, extracellular	24.79	31.3
AT5G03980.1	Thale cress	vacuole	21.22	31.27
TraesCS7A01G429100.2	Wheat	extracellular	24.58	31.2
PGSC0003DMT400011187	Potato	plasma membrane	24.37	31.18
TraesCS7B01G329000.1	Wheat	extracellular	24.16	31.08
PGSC0003DMT400016547	Potato	extracellular	22.27	30.9
TraesCS7A01G428800.1	Wheat	extracellular	23.95	30.81
TraesCS7B01G329200.1	Wheat	extracellular	24.16	30.67
PGSC0003DMT400016546	Potato	endoplasmic reticulum, vacuole	23.53	30.35
PGSC0003DMT400075261	Potato	cytosol	22.06	29.91
Os06t0694200-01	Rice	extracellular	23.74	29.82
Os02t0608801-00	Rice	extracellular	24.79	29.28
TraesCS6B01G240600.1	Wheat	vacuole	23.95	29.08
Zm00001d007351_P001	Maize	plasma membrane	25.63	28.98
HORVU6Hr1G053960.1	Barley	vacuole	23.95	28.93
HORVU7Hr1G098600.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	25.0	28.74
OQU85266	Sorghum	extracellular	23.74	28.32
TraesCS1D01G250200.1	Wheat	extracellular, vacuole	24.16	28.19
Os02t0604000-00	Rice	extracellular	23.95	28.08
TraesCS6D01G194200.1	Wheat	vacuole	23.53	28.07
TraesCS1B01G261200.1	Wheat	endoplasmic reticulum, mitochondrion, vacuole	23.95	28.01
TraesCS6A01G211100.1	Wheat	extracellular, plasma membrane, vacuole	23.32	27.82
HORVU1Hr1G061910.1	Barley	endoplasmic reticulum, golgi, mitochondrion	24.16	27.78
PGSC0003DMT400011185	Potato	endoplasmic reticulum, extracellular, vacuole	22.27	27.68
TraesCS1A01G250600.1	Wheat	endoplasmic reticulum	23.32	27.34
EES05386	Sorghum	extracellular, vacuole	23.95	27.08
Zm00001d014596_P001	Maize	endoplasmic reticulum, vacuole	22.9	27.05
KXG30582	Sorghum	vacuole	22.27	27.04
Zm00001d017140_P001	Maize	endoplasmic reticulum, extracellular	23.11	27.03
TraesCS7B01G329900.1	Wheat	extracellular	24.79	26.94
PGSC0003DMT400026549	Potato	extracellular, vacuole	22.48	26.75
KXG20727	Sorghum	endoplasmic reticulum, extracellular, vacuole	23.11	26.13
HORVU7Hr1G098580.5	Barley	mitochondrion	19.33	22.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400034309	EnsemblPlantsGene:PGSC0003DMG401013193	Gene3D:3.40.50.1110	InterPro:IPR036514	InterPro:SGNH_hydro_sf	PANTHER:PTHR22835
PANTHER:PTHR22835:SF289	PGSC:PGSC0003DMG401013193	SEG:seg	UniParc:UPI0002968C4D	UniProt:M1B0G5	MapMan:35.1

Description

Alpha-L-fucosidase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG401013193]

Coordinates

chr1:-:76784494..76788125

Molecular Weight (calculated)

52862.9 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.076

Length

476 amino acids

Sequence
(BLAST)

001: MDFYQNATGR CSNGMLIIDF IAVESGLPLL NPYKDENADF RHGVNFAVAG CTALSAKSLA GNNIVNIALT NSSLSVQLDW MSSHFQITCS PDCPEKMNKS
101: LFLVGEIGGN EFIYGLSQGK TMDESRRMVP EVVQTIIHGV KRVIGFGATQ IIVPGNFPIG CHPIFLTKFM TNISTAYDEY HCLKDLNNFA IFFNRNLQQA
201: IDELKKDYPN ITLIYGDYYN AFLWLLQNAG SLENAIVMNQ PRPKVNNYTD ATQLVIGPKR SNKIGRPSPS DNVNVLDMMR KLDENFSYRL CKLDNVQGTL
301: SSYSQSVVAD PVPLDVDSSD DDKGDHALSF DESTLVFDNI VASDSETVDD CIQTSLQECV VHDFPFGLNA GILWLSGGKL EISGISAYKV FAEIPFRDVD
401: MKVANSLEND VVKPETKVFD ERFHTIFTVR YDSSNLVMFD EMLFALSCML SACSSSNGII AHLNEIDPTK LPFSPY

Best Arabidopsis Sequence Match ( AT1G28570.1 )
(BLAST)

001: MATLFMKLVS FFLILSTFCL TTVNSEPQCH NFKSIISFGD SIADTGNLLA LSDPTNLPKV AFLPYGETFF HHPTGRFSNG RLIIDFIAEF LGFPLVPPFY
101: GSQNANFEKG VNFAVGGATA LERSFLEERG IHFPYTNVSL AVQLSSFKES LPNLCVSPSD CRDMIENSLI LMGEIGGNDY NYAFFVGKNI EEIKELVPLV
201: IETISSAITE LIGMGGKTFL VPGEFPLGCS VAYLSLYQTS NIEEYDPLTG CLKWLNKFSE YHDEQLQAEL NRLQKLYPHV NIIYADYYNT LLRLAQEPAK
301: FGFISRPLPA CCALGGPFNF TLGRKRGTQV PECCDDPSKY VSWDGVHMTE AAYRLMAEGI LKGPYAIPPF DWSCLSSEIK NTQNSLMNN

Arabidopsis Description

GDSL esterase/lipase At1g28570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXJ1]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.