Factsheet for PGSC0003DMT400066626

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 8
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066624	Potato	vacuole	30.13	98.35
PGSC0003DMT400066630	Potato	nucleus, peroxisome, vacuole	59.49	66.95
PGSC0003DMT400076556	Potato	extracellular, vacuole	29.37	24.27
PGSC0003DMT400063802	Potato	vacuole	28.86	23.7
PGSC0003DMT400002249	Potato	vacuole	29.37	23.39
PGSC0003DMT400036974	Potato	extracellular, vacuole	26.58	23.08
PGSC0003DMT400074071	Potato	vacuole	26.58	23.03
PGSC0003DMT400002245	Potato	cytosol	12.91	20.99
PGSC0003DMT400063806	Potato	extracellular, vacuole	10.13	19.51
PGSC0003DMT400066638	Potato	mitochondrion	6.84	15.08

Protein Annotations

MapMan:19.4.2.2	Gene3D:3.40.50.12670	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004180	GO:GO:0004185	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0016787	GO:GO:0019538	InterPro:IPR029058	UniProt:M1CFX2	PFAM:PF00450	EnsemblPlantsGene:PGSC0003DMG401025898
PGSC:PGSC0003DMG401025898	EnsemblPlants:PGSC0003DMT400066626	PRINTS:PR00724	ScanProsite:PS00131	PANTHER:PTHR11802	PANTHER:PTHR11802:SF132
InterPro:Peptidase_S10	MEROPS:S10.A41	SUPFAM:SSF53474	InterPro:Ser_caboxypep_ser_AS	UniParc:UPI0002957DA1	:

Description

Serine carboxypeptidase [Source:PGSC_GENE;Acc:PGSC0003DMG401025898]

Coordinates

chr1:-:84860640..84863185

Molecular Weight (calculated)

45533.3 Da

IEP (calculated)

6.173

GRAVY (calculated)

-0.033

Length

395 amino acids

Sequence
(BLAST)

001: MVLKYLFLKL EKSVVIWVQL WYLFDINAVA NILFLESPAG VGFSYSNTSA DYITGDEKTR QDSFTFLLNW MERFPEYKHR DFYIVGESYA GHYVPQLAQL
101: ILSHRKTEPN LVINLQGIAT GNALLDFETM QSGSYDFYWT HALISDEVHD GIVLNCNFSA ETTSEACNEY IKQADSSLGN IYAYDIYAPL CDPNANTSLP
201: VCGFDPCSDN YVNSYLNSAE VQKALNVRRI PYSWAPCASH LHWKDSPYTV LLVFQELMQS GIRVWIYSGD TDSVLPVTTT RYDINKIKIP VKTPWYSWYF
301: QGEVTKWSLY FFTCTITILC SKNIMYVIDI SFFFQGWWLC SGIRELDICD GKRSRTFRAK LSTWSCIDHV LILHQWHTPS LVIDKSSFLK KGKLI

Best Arabidopsis Sequence Match ( AT2G24000.1 )
(BLAST)

001: MARTHLLFLL FVLLSLATSS TSTKEQEEDR IKALPGQPKV GFSQFSGYVT VNESHGRSLF YWLTESSSHS PHTKPLLLWL NGGPGCSSIA YGASEEIGPF
101: RISKTGCNLY LNNFSWNTEA NLLFLESPVG VGFSYTNTSS DFEESGDERT AQENLIFLIS WMSRFPQYRY RDFYIVGESY AGHYVPQLAQ KIHEYNNAYK
201: NPVINLKGFM VGNPEMDKNN DRLGTITYWW SHAMISDASY NRILKNCDFT ADRFSKECDS AIYVAAADFG DIDQYSIYTP KCVPPQDQTN QTKFEQMMQM
301: HTTKRFLEDQ YDPCTENYAE IYYNRPEVQR AMHANHTAIP YKWTACSDSV FNNWNWRDSD NSMLPIYKEL IAAGLRIWVY SGDTDSVIPV TATRYSLGKL
401: NLRVKTRWYP WYSGNQVGGR TEVYEGLTFV TVRGAGHEVP FFQPQSALIL LRSFLAGNEL SRSY

Arabidopsis Description

SCPL22Serine carboxypeptidase-like 22 [Source:UniProtKB/Swiss-Prot;Acc:Q1PF08]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.