Factsheet for PGSC0003DMT400066638

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G244200.1	Wheat	plastid, vacuole	46.93	31.46
TraesCS5A01G239700.1	Wheat	vacuole	48.6	31.41
PGSC0003DMT400063806	Potato	extracellular, vacuole	35.2	30.73
AT3G56540.1	Thale cress	vacuole	44.13	29.92
TraesCS4A01G300200.1	Wheat	vacuole	21.79	27.27
KRH30255	Soybean	peroxisome	27.93	22.94
TraesCS2D01G090800.1	Wheat	vacuole	45.81	21.52
PGSC0003DMT400066624	Potato	vacuole	14.53	21.49
PGSC0003DMT400076556	Potato	extracellular, vacuole	45.81	17.15
PGSC0003DMT400036974	Potato	extracellular, vacuole	42.46	16.7
PGSC0003DMT400063802	Potato	vacuole	44.69	16.63
PGSC0003DMT400074071	Potato	vacuole	40.22	15.79
AT3G52010.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	39.66	14.58
PGSC0003DMT400002249	Potato	vacuole	40.22	14.52
PGSC0003DMT400066630	Potato	nucleus, peroxisome, vacuole	22.35	11.4
PGSC0003DMT400066626	Potato	extracellular, vacuole	15.08	6.84
Zm00001d015872_P001	Maize	cytosol	1.68	2.04
PGSC0003DMT400002245	Potato	cytosol	0.0	0.0

Protein Annotations

MapMan:19.4.2.2	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004185
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR029058
UniProt:M1CFX6	PFAM:PF00450	EnsemblPlantsGene:PGSC0003DMG401025899	PGSC:PGSC0003DMG401025899	EnsemblPlants:PGSC0003DMT400066638	PRINTS:PR00724
PANTHER:PTHR11802	PANTHER:PTHR11802:SF78	InterPro:Peptidase_S10	MEROPS:S10.A41	SUPFAM:SSF53474	UniParc:UPI00029671DA

Description

Serine carboxypeptidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401025899]

Coordinates

chr1:-:84884684..84887488

Molecular Weight (calculated)

19944.4 Da

IEP (calculated)

8.382

GRAVY (calculated)

-0.600

Length

179 amino acids

Sequence
(BLAST)

001: MDNQARTLMS WRRSKIRSRM INSYQDETWS TEKLVFDSDE EEKLHVGNME DDLIKDGLPG QPKTNVKFKQ YAGYVNVDEK NGRSLFYYFA ESASGNASSK
101: PLVLWLNGGP GCSSLGFGAM LELGPFGVKP DGKTLYSRTF SWNKVANVMF LESPAGVGFS YSNTSSDYAQ SGDKRTAIK

Best Arabidopsis Sequence Match ( AT2G24000.1 )
(BLAST)

001: MARTHLLFLL FVLLSLATSS TSTKEQEEDR IKALPGQPKV GFSQFSGYVT VNESHGRSLF YWLTESSSHS PHTKPLLLWL NGGPGCSSIA YGASEEIGPF
101: RISKTGCNLY LNNFSWNTEA NLLFLESPVG VGFSYTNTSS DFEESGDERT AQENLIFLIS WMSRFPQYRY RDFYIVGESY AGHYVPQLAQ KIHEYNNAYK
201: NPVINLKGFM VGNPEMDKNN DRLGTITYWW SHAMISDASY NRILKNCDFT ADRFSKECDS AIYVAAADFG DIDQYSIYTP KCVPPQDQTN QTKFEQMMQM
301: HTTKRFLEDQ YDPCTENYAE IYYNRPEVQR AMHANHTAIP YKWTACSDSV FNNWNWRDSD NSMLPIYKEL IAAGLRIWVY SGDTDSVIPV TATRYSLGKL
401: NLRVKTRWYP WYSGNQVGGR TEVYEGLTFV TVRGAGHEVP FFQPQSALIL LRSFLAGNEL SRSY

Arabidopsis Description

SCPL22Serine carboxypeptidase-like 22 [Source:UniProtKB/Swiss-Prot;Acc:Q1PF08]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.