Factsheet for PGSC0003DMT400002245

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002249	Potato	vacuole	95.06	46.57
Solyc01g010710.2.1	Tomato	extracellular	90.12	44.69
VIT_14s0108g00100.t01	Wine grape	extracellular, vacuole	53.91	27.35
VIT_14s0108g00110.t01	Wine grape	vacuole	52.67	23.27
PGSC0003DMT400063802	Potato	vacuole	35.39	17.88
PGSC0003DMT400076556	Potato	extracellular, vacuole	34.98	17.78
PGSC0003DMT400074071	Potato	vacuole	32.51	17.32
PGSC0003DMT400066630	Potato	nucleus, peroxisome, vacuole	24.69	17.09
PGSC0003DMT400036974	Potato	extracellular, vacuole	31.28	16.7
PGSC0003DMT400066626	Potato	extracellular, vacuole	20.99	12.91
PGSC0003DMT400063806	Potato	extracellular, vacuole	4.53	5.37
Solyc01g010730.1.1	Tomato	extracellular, vacuole	1.65	4.35
PGSC0003DMT400066624	Potato	vacuole	0.0	0.0
PGSC0003DMT400066638	Potato	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400002245	EnsemblPlantsGene:PGSC0003DMG402000860	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824	GO:GO:0004185
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:AB_hydrolase
InterPro:IPR029058	InterPro:Peptidase_S10	MEROPS:S10.005	PANTHER:PTHR11802	PANTHER:PTHR11802:SF84	PFAM:PF00450
PGSC:PGSC0003DMG402000860	SUPFAM:SSF53474	UniParc:UPI00029520AA	UniProt:M0ZJU0	MapMan:19.4.2.2	:

Description

Serine carboxypeptidase-like enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG402000860]

Coordinates

chr1:-:13563391..13565510

Molecular Weight (calculated)

27019.5 Da

IEP (calculated)

7.539

GRAVY (calculated)

-0.209

Length

243 amino acids

Sequence
(BLAST)

001: MSNDCSEVWE LTNEEMGSDT DMGDLLAPIC VSSGAAGQLG VLGKLATIHE KDVRKSGDPC LTDRIYMYLN KPEVQKALHA NTTHLPYAWD FCLGHLQYQR
101: GDLAINVIPL LSNILKENIQ VLLYSGDQDT KIPVTQTRKI AKLLARDLKL VALDKYGPWY DDLQIGGWSQ SYGGVREGKN VTYLTFATVR GAAHEVPYTS
201: PSQALTLFRA FLKGQPPPRR SNTIRANKLH NLIDLMNLFS IAI

Best Arabidopsis Sequence Match ( AT5G42240.1 )
(BLAST)

001: MASVSWRAVA VAMVVVLLSL QWFAKGYPEE DLVVRLPGQP TVGFKQYAGY VDVDVKAGRS LFYYYVEAVK QPDSKPLTLW LNGGPGCSSI GGGAFTELGP
101: FYPTGDGRGL RVNSMSWNKA SHLLFVESPA GVGWSYSNKS SDYNTGDKST ANDMLVFLLR WFEKFPKLKS RDLFLTGESY AGHYIPQLAD AILSYNSHSS
201: GFKFNIKGVA IGNPLLKLDR DSPATYEFFW SHGMISDELK LTITSQCDFD DYTFASPHNV STACNEAISE TENIITEYVN NYDVLLDVCY PSIVQQELRL
301: KKMATKMSMG VDVCMTYERR FYFNLPEVQK ALHANRTHLP YSWSMCSGVL NYSDIDGNID MLPILKRIIL NKTPIWIFSG DQDSVVPFGG SRTLVRELAQ
401: DLNFKTTVPY GAWFHKSQVG GWAIEYGKLL TFATVRGAAH MVPYAQPSRA LHLFSSFVSG RRLPNNTHSS TDE

Arabidopsis Description

SCPL42Serine carboxypeptidase-like 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH05]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.