Factsheet for PGSC0003DMT400063806

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29250_001	Banana	extracellular	25.37	42.98
PGSC0003DMT400066638	Potato	mitochondrion	30.73	35.2
PGSC0003DMT400063802	Potato	vacuole	71.22	30.35
PGSC0003DMT400066624	Potato	vacuole	15.61	26.45
PGSC0003DMT400076556	Potato	extracellular, vacuole	57.56	24.69
PGSC0003DMT400036974	Potato	extracellular, vacuole	40.49	18.24
PGSC0003DMT400074071	Potato	vacuole	40.49	18.2
PGSC0003DMT400002249	Potato	vacuole	40.49	16.73
PGSC0003DMT400066630	Potato	nucleus, peroxisome, vacuole	22.93	13.39
PGSC0003DMT400066626	Potato	extracellular, vacuole	19.51	10.13
PGSC0003DMT400002245	Potato	cytosol	5.37	4.53

Protein Annotations

MapMan:19.4.2.2	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004185
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR029058
UniProt:M1CBA0	PFAM:PF00450	EnsemblPlantsGene:PGSC0003DMG400024804	PGSC:PGSC0003DMG400024804	EnsemblPlants:PGSC0003DMT400063806	PRINTS:PR00724
PANTHER:PTHR11802	PANTHER:PTHR11802:SF20	InterPro:Peptidase_S10	SUPFAM:SSF53474	SignalP:SignalP-noTM	UniParc:UPI000295D101
SEG:seg	:	:	:	:	:

Description

Serine carboxypeptidase [Source:PGSC_GENE;Acc:PGSC0003DMG400024804]

Coordinates

chr4:-:58421233..58425729

Molecular Weight (calculated)

22731.4 Da

IEP (calculated)

8.921

GRAVY (calculated)

-0.039

Length

205 amino acids

Sequence
(BLAST)

001: MGVWWFCGLV ILGLVVGGKG YTEEDLVKAL PGQPKVGFRQ YAGYVDVNVK AGRSLFYYFV EAEVKPDDKT LTLWLNGGNG RGLRRNSKSW NKALNLLFVE
101: SPAGVGWSYS DTSSDYTTAM DMHIFMMEWV KKFPAFKSRE LYGTGESYAV LTLGYGMISK LLTSLLKKGI FEWSDAATII AFETLKDAIH GGGRCYGTGA
201: IRLQD

Best Arabidopsis Sequence Match ( AT1G43780.1 )
(BLAST)

001: MVGGKWRFLE VAVVVMVLQW SCDYNGNLAE GFPVQDLVTK LPGQPEVAFR QFAGYVDIDV KAGRSLFYYF VEAEKQPHSK PLTLWLNGGP GCSSIGGGAF
101: TELGPFYPTG DARGLRRNPK SWNKASNLLF VDSPAGVGWS YSNTTSDYTT GDESTAKDML VFMLRWLEKF PQFKTRNLFL AGESYAGHYV PQLADVILEY
201: NAQRSNRFKF NLKGIAIGNP LLKLDRDVPA IYEFFWSHGM ISDELGLTIM NQCDFEDYTF TDSHNISKLC EAAVNQAGTI ITQYVNYYDI LLDVCYPSLF
301: EQELRLKKMG TRMSFGVDVC MSFEEQLYLN LPEVQKALHA NRTKLPYEWS MCSSLLNYKY TDGNANMLPI LKRIVKSKVP VWVFSGDEDS VIPLLGSRTL
401: VKELADDLNF NTTVPYGAWF DKGQVGGWVV EYGNLLTFAT VRGAAHMVPY SQPSRALHLF TSFVLGRKLP HKSPPALHD

Arabidopsis Description

SCPL44Carboxypeptidase [Source:UniProtKB/TrEMBL;Acc:A0A178WN63]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.