Factsheet for PGSC0003DMT400073238

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g071880.2.1	Tomato	plasma membrane	95.73	74.27
GSMUA_Achr6P25980_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	39.77	52.39
PGSC0003DMT400035698	Potato	cytosol, endoplasmic reticulum, plasma membrane	32.51	51.65
PGSC0003DMT400034331	Potato	plasma membrane	32.12	51.13
VIT_10s0003g01880.t01	Wine grape	cytosol	61.92	49.69
PGSC0003DMT400039817	Potato	plastid	39.9	49.12
Bra032333.1-P	Field mustard	plasma membrane	48.19	45.76
KRH21191	Soybean	plasma membrane	58.68	44.59
KRH59039	Soybean	plasma membrane	55.96	43.9
CDX90208	Canola	plasma membrane	53.76	40.93
CDY35279	Canola	plasma membrane	53.76	40.93
AT1G29750.2	Thale cress	plasma membrane	53.63	40.55
CDY26316	Canola	plasma membrane	52.59	39.92
CDX99850	Canola	plasma membrane	52.46	39.82
PGSC0003DMT400044535	Potato	plasma membrane	49.35	37.1
PGSC0003DMT400073675	Potato	plasma membrane	43.78	36.58

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.8.2	Gene3D:2.60.120.430	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_dom_sf	UniProt:M1CRM7	InterPro:Malectin	PFAM:PF07714
PFAM:PF11721	EnsemblPlantsGene:PGSC0003DMG400028454	PGSC:PGSC0003DMG400028454	EnsemblPlants:PGSC0003DMT400073238	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27006	PANTHER:PTHR27006:SF55	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0002948B41
SEG:seg	:	:	:	:	:

Description

Kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400028454]

Coordinates

chr2:-:31320740..31328950

Molecular Weight (calculated)

86054.6 Da

IEP (calculated)

6.646

GRAVY (calculated)

-0.202

Length

772 amino acids

Sequence
(BLAST)

001: MHATGLEGPI PTNISLLNKL TDLRISDIGG PVQAFPSLGD IMGFHNLVLR NCSLSGELPV YIWAMKDLQT LDVTFNKLVG EIPNNISARS MLKFVFLTGN
101: MLSGDIPDSL LKSGINVDLS YNNFTWQGPD QHACQQNMNL YLNLYKSSAA VSPLMRIHPC TKDFTCRRYG CSLHVNSGGN DFTVKESDGE VHYAGDASVD
201: GGSARYFSSS TNYWGLSSTG DFMDDNNDQN ARFIESTQSK SLSELYNNAR MSPLSLTYFR YCLRNGSYNV SLHFAEISFT NDSTYTSLGR RVFDIYIQEK
301: LVWKDFNIVN EAGGVQTPLV RHFKTSVTDN FLEIRFYWAG KGTIRIPVRG HYGPLISAIS LKPTFGSCSE EDKKNKKSAT VYVIVGVVAT CIFLLLISTL
401: WWKGYLQCKK KQRKDLEGME LQTISFTLKQ IKAATNNFDA SNKIGEGGFG AVFKGRLSDG TLVAVKQLSR QSRQGNREFL NEIGMISCLQ HPNLVKLHGC
501: CIEGTELLLV YEYLENNSLA RALFHSEKSQ LMLDWPTRFK ICVGIAKGLA FLHEESSLKI VHRDIKATNV LLDRELNPKI SDFGLAKLTE DDNTHISTRV
601: AGTIGYMAPE YALWGYLTYK ADVYSFGIVL LEIVSGKHNY GYVPSDNFIC LLDWACHLLQ NGKIEELIDD KLGSQFSKAE AERTIKVALL CTSATPSLRP
701: VMSEAVGMLE GKIDAPDSIP EASMYTDDLR FQALKDFQQE RLNQSASSNQ AQCSSIQTAS DLCEYNPESR SD

Best Arabidopsis Sequence Match ( AT1G29750.2 )
(BLAST)

0001: MISLYQILAE KKKKKKNDLN IFAFSVFAII CFKFYSVNAI KLPQQEVDAL QQIATTLGSK FWKFDAENCK IEMVGLTETP PPTAKQEIEC ECSPTNDTDC
0101: HVVKFAFKDH NLPGTLPQIV KLPYLREIDL AYNYINGTLP REWASSNLTF ISLLVNRLSG EIPKEFGNSS LTYLDLESNA FSGTIPQELG NLVHLKKLLL
0201: SSNKLTGTLP ASLARLQNMT DFRINDLQLS GTIPSYIQNW KQLERLEMIA SGLTGPIPSV ISVLSNLVNL RISDIRGPVQ PFPSLKNVTG LTKIILKNCN
0301: ISGQIPTYLS HLKELETLDL SFNKLVGGIP SFAQAENLRF IILAGNMLEG DAPDELLRDG ITVDLSYNNL KWQSPESRAC RPNMNLNLNL FQSTSTKKSS
0401: KFLPCIKDFK CPRYSSCLHV NCGGSDMYVK EKKTKELYEG DGNVEGGAAK YFLKPDANWG FSSTGDFMDD NNFQNTRFTM FVPASNQSDL YKSARIAPVS
0501: LTYFHACLEN GNYTINLDFA EIRFTNDENY NRLGRRLFDI YIQEKLVAKD FNIMDEAKGA QTPIIKPLTA YVTNHFLTIR LSWAGKGTTR IPTRGVYGPI
0601: ISAISIVSDS KPCERPKTGM SPGAYIAIGI GAPCLIIFIL GFLWICGCLP RCGRQRKDPY EEELPSGTFT LRQIKFATDD FNPTNKIGEG GFGAVFKGVL
0701: ADGRVVAVKQ LSSKSRQGNR EFLNEIGAIS CLQHPNLVKL HGFCVERAQL LLAYEYMENN SLSSALFSPK HKQIPMDWPT RFKICCGIAK GLAFLHEESP
0801: LKFVHRDIKA TNILLDKDLT PKISDFGLAR LDEEEKTHIS TKVAGTIGYM APEYALWGYL TFKADVYSFG VLVLEIVAGI TNSNFMGAGD SVCLLEFANE
0901: CVESGHLMQV VDERLRPEVD RKEAEAVIKV ALVCSSASPT DRPLMSEVVA MLEGLYPVPE STPGVSRNAG DIRFKAFKDL RRGMENNSKT QCSVKSYPSS
1001: SSTSSGAGQA VQERKKEESR P

Arabidopsis Description

RKF1Probable LRR receptor-like serine/threonine-protein kinase RFK1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXF2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.