Factsheet for PGSC0003DMT400039817

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034331	Potato	plasma membrane	69.06	89.28
PGSC0003DMT400035698	Potato	cytosol, endoplasmic reticulum, plasma membrane	64.11	82.72
VIT_19s0014g00750.t01	Wine grape	plasma membrane	53.59	70.59
Solyc12g014350.1.1	Tomato	endoplasmic reticulum, extracellular	97.45	60.02
PGSC0003DMT400073675	Potato	plasma membrane	86.76	58.87
VIT_19s0014g00790.t01	Wine grape	cytosol, nucleus, plasma membrane	70.65	50.34
VIT_19s0014g00680.t01	Wine grape	plasma membrane	74.48	45.74
KRH26159	Soybean	plasma membrane	71.29	44.21
KRH55049	Soybean	endoplasmic reticulum	70.97	43.97
VIT_19s0014g00810.t01	Wine grape	plasma membrane, plastid	70.65	43.43
KRH21908	Soybean	plasma membrane	70.33	43.11
KRH27378	Soybean	plasma membrane	68.42	42.6
KRH27392	Soybean	plasma membrane	68.1	42.45
AT1G53430.1	Thale cress	plasma membrane	68.58	41.43
AT1G53440.1	Thale cress	plasma membrane	68.1	41.26
Bra038124.1-P	Field mustard	plasma membrane	66.67	41.02
CDY60204	Canola	plasma membrane	67.3	40.42
CDY25853	Canola	plasma membrane	66.67	40.04
PGSC0003DMT400073238	Potato	cytosol, nucleus, plasma membrane	49.12	39.9
GSMUA_Achr6P25940_001	Banana	plasma membrane	61.72	39.65
Zm00001d016242_P002	Maize	plasma membrane	52.31	37.27
GSMUA_Achr1P04980_001	Banana	plasma membrane	56.14	34.99
PGSC0003DMT400044535	Potato	plasma membrane	55.98	34.18
KXG29872	Sorghum	plasma membrane	53.11	32.33
VIT_19s0014g00830.t01	Wine grape	plasma membrane	74.48	28.51
Os02t0232500-01	Rice	extracellular, plasma membrane	23.13	20.17

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.8.2	Gene3D:2.60.120.430	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1B8U6
InterPro:Malectin	PFAM:PF07714	PFAM:PF11721	EnsemblPlantsGene:PGSC0003DMG400015391	PGSC:PGSC0003DMG400015391	EnsemblPlants:PGSC0003DMT400039817
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27006	PANTHER:PTHR27006:SF101	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0002949867	SEG:seg

Description

Leucine-rich repeat family protein / protein kinase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015391]

Coordinates

chr12:+:180536..184289

Molecular Weight (calculated)

69161.5 Da

IEP (calculated)

6.979

GRAVY (calculated)

-0.175

Length

627 amino acids

Sequence
(BLAST)

001: MKPLICPTET KYTSLFINCG GPRTSFEGND YEGDTTDRGP SYFSSPSDRW AFSSSGVYVG LQAASYVATN TFSLNVSGPD FYNTARLAPN SLKYYGLCLR
101: GGSYRVRLHF AEIMFSNDST YSSLGRRIFD VAIQGRVVLR DFNIMEEANG VGKVITKDFA DVTVSSTLEI HLYWTGKGTN AIPDRGVYGP LISAITVTPN
201: FDVDTGSGLP VGAVIGIVLA SIVVVLLVLF ALWKKGIFGG KNNQEELELR ALDLQTGHFR LRQIKAATNN FDPANKIGEG GFGPVYKGVL ADGAIIAVKQ
301: LSSKSKQGNR EFVNEIGMIS ALQHPNLVKL YGCCIEGNQL LVIYEYMENN CLARALFGRD DQRLNIDWAT RKRICSGIAK GLAYLHEESR LKIVHRDIKC
401: TNVLLDKDLN AKISDFGLAK LDEEENTHIS TRIAGTVGYM APEYAMRGYL TDKADVYSFG VVLLEIVSGK SNTNYRPKEE FVYLLDWAYV LQEQGNLLEL
501: VDPRLGTHYS KKEAMRMINI SLLCTNPSPT LRPSMSSVVS MLEGKLPVQA PIIKRTTSDD EMRFKSFEKL SHDSQTTQVS TYSQDSQGQS VNAPWSDSSV
601: SVSVPGKDGN VTSTSRLLPD LYNVNLD

Best Arabidopsis Sequence Match ( AT1G53430.2 )
(BLAST)

001: MAIQTLRTIF RKLQNQTVNI ERTSCSDQNW NFVVESASNS PTSNITCDCT FNASSVCRVT NIQLKSFSLP GIFPPEFGNL TRLREIDLSR NFLNGTIPTT
101: LSQIPLEILS VIGNRLSGPF PPQLGDITTL TDVNLETNLF TGPLPRNLGN LRSLKELLLS ANNFTGQIPE SLSNLKNLTE FRIDGNSLSG KIPDFIGNWT
201: LLERLDLQGT SMEGPIPPSI SNLTNLTELR ITDLRGQAAF SFPDLRNLMK MKRLGPIPEY IGSMSELKTL DLSSNMLTGV IPDTFRNLDA FNFMFLNNNS
301: LTGPVPQFII NSKENLDLSD NNFTQPPTLS CNQLDVNLIS SYPSVTDNSV QWCLREGLPC PEDAKQSSLF INCGGSRLKI GKDTYTDDLN SRGQSTFSSV
401: SERWGYSSSG VWLGKEDAGY LATDRFNLIN GSTPEYYKTA RLSPQSLKYY GLCLRRGSYK LQLHFAEIMF SNDQTFNSLG RRIFDIYVQG NLLERDFNIA
501: ERAGGVGKPF IRQIDGVQVN GSTLEIHLQW TGKGTNVIPT RGVYGPLISA ITITPNFKVD TGKPLSNGAV AGIVIAACAV FGLLVLVILR LTGYLGGKEV
601: DENEELRGLD LQTGSFTLKQ IKRATNNFDP ENKIGEGGFG PVYKGVLADG MTIAVKQLSS KSKQGNREFV TEIGMISALQ HPNLVKLYGC CIEGKELLLV
701: YEYLENNSLA RALFGTEKQR LHLDWSTRNK ICIGIAKGLA YLHEESRLKI VHRDIKATNV LLDLSLNAKI SDFGLAKLND DENTHISTRI AGTIGYMAPE
801: YAMRGYLTDK ADVYSFGVVC LEIVSGKSNT NYRPKEEFVY LLDWAYVLQE QGSLLELVDP DLGTSFSKKE AMRMLNIALL CTNPSPTLRP PMSSVVSMLE
901: GKIKVQPPLV KREADPSGSA AMRFKALELL SQDSESQVST YARNREQDIS SSSMDGPWVD SSFSEPGKDV SLQQQEEGRS SSSSRKLLDD LTDVKIE

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At1g53430 [Source:UniProtKB/Swiss-Prot;Acc:C0LGG8]
SUBAcon: [mitochondrion,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.