Factsheet for GSMUA_Achr6P25940_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034331	Potato	plasma membrane	31.76	63.92
PGSC0003DMT400035698	Potato	cytosol, endoplasmic reticulum, plasma membrane	31.25	62.76
GSMUA_Achr1P04980_001	Banana	plasma membrane	64.45	62.52
VIT_19s0014g00750.t01	Wine grape	plasma membrane	30.12	61.76
PGSC0003DMT400039817	Potato	plastid	39.65	61.72
VIT_19s0014g00790.t01	Wine grape	cytosol, nucleus, plasma membrane	52.66	58.41
GSMUA_Achr4P15520_001	Banana	cytosol	33.3	58.35
KRH55049	Soybean	endoplasmic reticulum	59.12	57.02
VIT_19s0014g00680.t01	Wine grape	plasma membrane	59.53	56.91
PGSC0003DMT400073675	Potato	plasma membrane	53.59	56.6
KRH26159	Soybean	plasma membrane	58.5	56.48
KRH27392	Soybean	plasma membrane	57.38	55.67
KRH27378	Soybean	plasma membrane	57.17	55.41
KRH21908	Soybean	plasma membrane	57.68	55.03
GSMUA_Achr6P25980_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	32.58	54.27
Solyc12g014350.1.1	Tomato	endoplasmic reticulum, extracellular	56.35	54.03
AT1G53440.1	Thale cress	plasma membrane	55.94	52.75
Bra038124.1-P	Field mustard	plasma membrane	54.92	52.6
VIT_19s0014g00810.t01	Wine grape	plasma membrane, plastid	54.82	52.45
CDY60204	Canola	plasma membrane	55.94	52.3
AT1G53430.1	Thale cress	plasma membrane	55.53	52.22
CDY25853	Canola	plasma membrane	55.64	52.01
KXG29872	Sorghum	plasma membrane	52.46	49.71
Zm00001d016242_P002	Maize	plasma membrane	44.77	49.66
Os02t0232500-01	Rice	extracellular, plasma membrane	34.22	46.45
VIT_19s0014g00830.t01	Wine grape	plasma membrane	59.94	35.71
GSMUA_Achr2P17280_001	Banana	plasma membrane	22.64	35.3
GSMUA_Achr7P16620_001	Banana	cytosol, plasma membrane, plastid	22.23	34.23
GSMUA_Achr8P07040_001	Banana	plasma membrane	37.4	33.99
GSMUA_Achr2P17300_001	Banana	plasma membrane	22.95	32.51
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	17.52	32.08

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.8.2	Gene3D:2.60.120.430	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr6G25940_001	EnsemblPlants:GSMUA_Achr6P25940_001	EnsemblPlants:GSMUA_Achr6T25940_001	InterPro:IPR000719	InterPro:IPR032675	InterPro:Kinase-like_dom_sf
InterPro:LRR_dom_sf	UniProt:M0TA89	InterPro:Malectin	PFAM:PF07714	PFAM:PF11721	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27006	PANTHER:PTHR27006:SF93	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF52058
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0002961CAC	SEG:seg

Description

Probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Source:GMGC_GENE;Acc:GSMUA_Achr6G25940_001]

Coordinates

chr6:-:26890400..26899364

Molecular Weight (calculated)

107714.0 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.131

Length

976 amino acids

Sequence
(BLAST)

001: MLTSEMMGVI ASKLEKKWDF SVDPCSQTNG WVVPGRSDMP VFTDNVTCDC NRTSNVCHVT SIKLKGQNLT GTLPAEFSKL PFLTDIDLTW NYLNGTIPAA
101: WASLPLVHLS LLGNRVSGPI PEEFAKMITL EELVLEGNQL QGPIPAALGK LANLKRFLAN GNNLSGELPE SLGNLKNLIM FLIDGNPISG KIPSFIGNWT
201: QLQRLDMQGT AMEGPFPPRF LALKNLKELR VSDLKGGIGS FPQLQNMRNM TKLVLRNLSI SGELPDYIGE MKALNSLLSP WFSCRDVSFN NLSGPIPGTY
301: AALTSSLNFM YLSNNNLNGK IPDWILNSAQ KLYAIDISYN SFTGSPAPAI CQRGSVNLVS SYSSTNSDTT LSCLRRNLPC SGESRNYNLF INCGGPKMRI
401: DDIEYEGDIL DLGTSEFYDS ESGKWAYSST GDFVDNQNPK FITANTTALD ITKPELYMTA RLSPLSLKYY GLCLFKGNYT VNLHFAEIMF TDDETYSSNG
501: RRLFDVSIQG RKVLKDFNIA KEANGTGKEI IKSFTVMVDG TLEIHFYWAG KGTNSVPLRG VYGPLMSAIS VTPSEPMEAC ENKLTVGTIL AIVAAACIIV
601: LLILCLIFLY IRRKNSKNNE LRGLELQTGQ FSLRHIKAAT KNFHPANKIG EGGFGPVYKG VLPDGSEIAV KQLSSKSKQG NREFVNEIGV ISALQHPNLV
701: KLYGCCIEGN QLLLVYEYME NNSLARGLHG PEGYRLGLDW QTRWKICLGI ARGLAYLHEE SRLKIVHRDI KATNILLDKD LNAKISDFGL AKLNEEENTH
801: ISTRIAGTLG YMAPEYAMRG YLTDKADVYS FGVVALEIVS GMSNTKYRPE EDCVYLLDWA YVCHEKGNLL ELVDPALGSS FSTEEALQML KLALLCTNIS
901: PTLRPNMSAV VSMLEGKTPI ELLSVQSSIT KGDDLRFKAF EKLSRDSQTE INSTDWPWPD SSVSAQSTKG DTTLLH

Best Arabidopsis Sequence Match ( AT1G53440.1 )
(BLAST)

0001: MGFFFSTRKG LLLIIFICLD IFGSNAQLLP EDEVQTLRTI FRKLQNQTVN IERTSCLDRK WNFVAESTSK LPTSNITCDC TFNASSVCRV TNIQLRGFNL
0101: RGIIPPEFGN LTRLTEIDLV LNFLSGTIPT TLSQIPLEIL AVTGNRLSGP FPPQLGQITT LTDVIMESNL FTGQLPPNLG NLRSLKRLLI SSNNITGRIP
0201: ESLSNLKNLT NFRIDGNSLS GKIPDFIGNW TRLVRLDLQG TSMEGPIPAS ISNLKNLTEL RITDLRGPTS PFPDLQNMTN MERLVLRNCL IREPIPEYIG
0301: TSMTMLKLLD LSSNMLNGTI PDTFRSLNAF NFMYLNNNSL TGPVPQFILD SKQNIDLSYN NFTQPPTLSC NQLDVNLISS YPSVTNNSVQ WCLRKDLPCP
0401: GDAHHSSLFI NCGGNRLKVD KDEYADDLNK RGASTFSSVS ERWGYSSSGA WLGNDGATYL ATDTFNLINE STPEYYKTAR LASQSLKYYG LCMRRGSYKV
0501: QLYFAEIMFS NDQTYSSLGR RLFDIYVQGI LLERDFNIAQ RAGGVGKPFL RQVDEVQVNG STLEIHLKWT GKGTNVIPTR GVYGPLISAI TVTPNFKVDT
0601: GKPLSNGVVA GIVIAACVAF GLLVLVILRL TGYLGGKEVD ENEELRGLDL QTGSFTLKQI KRATNNFDPE NKIGEGGFGP VYKGVLADGM TIAVKQLSSK
0701: SKQGNREFVT EIGMISALQH PNLVKLYGCC IEGKELLLVY EYLENNSLAR ALFGTEKQRL HLDWSTRNKV CIGIAKGLAY LHEESRLKIV HRDIKATNVL
0801: LDLSLNAKIS DFGLAKLDEE ENTHISTRIA GTIGYMAPEY AMRGYLTDKA DVYSFGVVCL EIVSGKSNTN YRPKEEFIYL LDWAYVLQEQ GSLLELVDPD
0901: LGTSFSKKEA MRMLNIALLC TNPSPTLRPP MSSVVSMLQG KIKVQPPLVK READPSGSAA MRFKALEHLS QDSESQVSTY TRNKEHKSSS SMDGPWVDSS
1001: FSDPSKDVSL LQQEEGNSSS SSRRLLDDLT DVEIE

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Source:UniProtKB/Swiss-Prot;Acc:C0LGG9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.