Factsheet for PGSC0003DMT400034331

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g00750.t01	Wine grape	plasma membrane	69.28	70.59
PGSC0003DMT400039817	Potato	plastid	89.28	69.06
PGSC0003DMT400035698	Potato	cytosol, endoplasmic reticulum, plasma membrane	62.27	62.14
PGSC0003DMT400073675	Potato	plasma membrane	85.36	44.81
VIT_19s0014g00790.t01	Wine grape	cytosol, nucleus, plasma membrane	75.26	41.48
VIT_19s0014g00680.t01	Wine grape	plasma membrane	76.29	36.24
KRH26159	Soybean	plasma membrane	72.58	34.82
KRH55049	Soybean	endoplasmic reticulum	72.58	34.78
VIT_19s0014g00810.t01	Wine grape	plasma membrane, plastid	72.78	34.61
KRH21908	Soybean	plasma membrane	71.75	34.02
KRH27392	Soybean	plasma membrane	70.1	33.8
KRH27378	Soybean	plasma membrane	70.1	33.76
AT1G53430.1	Thale cress	plasma membrane	69.9	32.66
AT1G53440.1	Thale cress	plasma membrane	69.07	32.37
Bra038124.1-P	Field mustard	plasma membrane	67.63	32.19
PGSC0003DMT400073238	Potato	cytosol, nucleus, plasma membrane	51.13	32.12
GSMUA_Achr6P25940_001	Banana	plasma membrane	63.92	31.76
CDY60204	Canola	plasma membrane	68.04	31.61
CDY25853	Canola	plasma membrane	67.63	31.42
Zm00001d016242_P002	Maize	plasma membrane	52.37	28.86
GSMUA_Achr1P04980_001	Banana	plasma membrane	57.11	27.53
PGSC0003DMT400044535	Potato	plasma membrane	57.53	27.17
KXG29872	Sorghum	plasma membrane	53.2	25.05
VIT_19s0014g00830.t01	Wine grape	plasma membrane	75.88	22.47
Os02t0232500-01	Rice	extracellular, plasma membrane	14.85	10.01

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.8.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1B0H6	PFAM:PF07714
EnsemblPlantsGene:PGSC0003DMG400013199	PGSC:PGSC0003DMG400013199	EnsemblPlants:PGSC0003DMT400034331	PIRSF:PIRSF000615	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27006	PANTHER:PTHR27006:SF101	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000294F53C	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013199]

Coordinates

chr12:-:7178606..7181678

Molecular Weight (calculated)

53630.3 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.186

Length

485 amino acids

Sequence
(BLAST)

001: MEEANGVGEV IIKDFDDITV SSTLEIHLYW TGKGTNAIPD RGVYGPLISA ISVTPNFKTG RRLPVGAVIG IVLASIVVVL IVLFSLWKKG IFGGKINQEE
101: LELRALDLQT GHFRLRQIKA ATNNFDPANK IGEGGFGPVY KGVLTDGAVI AVKQLSSKSK QGNREFVNEI GMISALQHPN LVKLHGCCIE GNQLLVIYEY
201: MENNCLARAL FGRDDQRLNL DWATRKRICS GIAKGLAYLH EESRLKIVHR DIKCTNVLLD KDLNAKISDF GLAKLDEEES THISTRIAGT VGYMAPEYAT
301: RGYLTDKADV YSFGVVALEI VSGKSNTSYR PKEEFVYLLD WAYVLQEQGN LLELVDPRLG SNYSKNEAMR MINLSLLCTN LSPTLRPSMS SVVSMLEGKV
401: PLQAPIIKRT ASSNDEMRVK SFEKLSHDSE ITQVSTYSQD SQGQSMNAPW NNSSGSIPGK DESSNRLLQD LYDINIDSQN FTSTF

Best Arabidopsis Sequence Match ( AT1G07650.2 )
(BLAST)

0001: MIYLHRIYFI IVLFTLIFHG RLGFSDNNKL HEAEVRALKE IGKKLGKKDW DFNKDPCSGE GTWIVTTYTT KGFESNITCD CSFLPQNSSC HVIRIGNLVG
0101: RALKSQNLTG IVPPEFSKLR HLKVLDLSRN SLTGSIPKEW ASMRLEDLSF MGNRLSGPFP KVLTRLTMLR NLSLEGNQFS GPIPPDIGQL VHLEKLHLPS
0201: NAFTGPLTEK LGLLKNLTDM RISDNNFTGP IPDFISNWTR ILKLQMHGCG LDGPIPSSIS SLTSLTDLRI SDLGGKPSSF PPLKNLESIK TLILRKCKII
0301: GPIPKYIGDL KKLKTLDLSF NLLSGEIPSS FENMKKADFI YLTGNKLTGG VPNYFVERNK NVDVSFNNFT DESSIPSHDC NRVTSNLVES FALGNKSHKG
0401: STCFLQRMPC VHPKRYHLYK LYINCGGGEV KVDKEITYQA DDEPKGASMY VLGANKRWAL SSTGNFMDND DDADEYTVQN TSRLSVNASS PSFGLYRTAR
0501: VSPLSLTYYG ICLGNGNYTV NLHFAEIIFT DDNTLYSLGK RLFDIYVQDQ LVIKNFNIQE AARGSGKPII KSFLVNVTDH TLKIGLRWAG KGTTGIPIRG
0601: VYGPMISAIS VEPNFKPPVY YDTKDIILKV GVPVAAATLL LFIIVGVFWK KRRDKNDIDK ELRGLDLQTG TFTLRQIKAA TDNFDVTRKI GEGGFGSVYK
0701: GELSEGKLIA VKQLSAKSRQ GNREFVNEIG MISALQHPNL VKLYGCCVEG NQLILVYEYL ENNCLSRALF GKDESSRLKL DWSTRKKIFL GIAKGLTFLH
0801: EESRIKIVHR DIKASNVLLD KDLNAKISDF GLAKLNDDGN THISTRIAGT IGYMAPEYAM RGYLTEKADV YSFGVVALEI VSGKSNTNFR PTEDFVYLLD
0901: WAYVLQERGS LLELVDPTLA SDYSEEEAML MLNVALMCTN ASPTLRPTMS QVVSLIEGKT AMQELLSDPS FSTVNPKLKA LRNHFWQNEL SRSLSFSTSG
1001: PRTASANSLV DAEEKTGLLD

Arabidopsis Description

Leucine-rich repeat transmembrane protein kinase [Source:UniProtKB/TrEMBL;Acc:F4HSE1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.