Factsheet for PGSC0003DMT400073675

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039817	Potato	plastid	58.87	86.76
PGSC0003DMT400034331	Potato	plasma membrane	44.81	85.36
PGSC0003DMT400035698	Potato	cytosol, endoplasmic reticulum, plasma membrane	43.83	83.33
VIT_19s0014g00750.t01	Wine grape	plasma membrane	35.17	68.28
VIT_19s0014g00790.t01	Wine grape	cytosol, nucleus, plasma membrane	60.5	63.52
VIT_19s0014g00680.t01	Wine grape	plasma membrane	68.07	61.61
KRH55049	Soybean	endoplasmic reticulum	65.37	59.68
KRH26159	Soybean	plasma membrane	64.83	59.25
KRH21908	Soybean	plasma membrane	63.74	57.58
KRH27392	Soybean	plasma membrane	62.66	57.55
VIT_19s0014g00810.t01	Wine grape	plasma membrane, plastid	63.53	57.55
KRH27378	Soybean	plasma membrane	62.66	57.5
AT1G53430.1	Thale cress	plasma membrane	62.66	55.78
AT1G53440.1	Thale cress	plasma membrane	62.23	55.56
Bra038124.1-P	Field mustard	plasma membrane	60.06	54.47
CDY60204	Canola	plasma membrane	60.71	53.74
GSMUA_Achr6P25940_001	Banana	plasma membrane	56.6	53.59
CDY25853	Canola	plasma membrane	60.5	53.54
GSMUA_Achr1P04980_001	Banana	plasma membrane	53.57	49.2
PGSC0003DMT400044535	Potato	plasma membrane	51.52	46.35
Zm00001d016242_P002	Maize	plasma membrane	43.4	45.57
KXG29872	Sorghum	plasma membrane	50.43	45.24
PGSC0003DMT400073238	Potato	cytosol, nucleus, plasma membrane	36.58	43.78
Os02t0232500-01	Rice	extracellular, plasma membrane	29.98	38.53
VIT_19s0014g00830.t01	Wine grape	plasma membrane	67.42	38.03

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.8.2	Gene3D:2.60.120.430	Gene3D:3.30.200.20	Gene3D:3.80.10.10	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_dom_sf	UniProt:M1CSF9	InterPro:Malectin	PFAM:PF07714
PFAM:PF11721	EnsemblPlantsGene:PGSC0003DMG400028617	PGSC:PGSC0003DMG400028617	EnsemblPlants:PGSC0003DMT400073675	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27006	PANTHER:PTHR27006:SF93	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0002954107	SEG:seg	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028617]

Coordinates

chr12:-:50035429..50041955

Molecular Weight (calculated)

102812.0 Da

IEP (calculated)

6.395

GRAVY (calculated)

-0.267

Length

924 amino acids

Sequence
(BLAST)

001: VTVKVLQTIS SKLGNRYWNV NRASCTQERD FNMTDPNYDE VFSNVKCNCS FNNGSVCHVV TIQLKRLNMT GILPPEFANL THLQELDLTR NYLSGSIPSS
101: YGQLRVTNLS LLGNRISGPI PKELGDIFTL EELVLENNLL EGPLPPNLGS LNRLRRMLLS ANNLNGTIPE NFSNLKNMRD FRIDGTSISG TIPDFIGNWT
201: EMDRLDIQGT SMEGPIPPTI SQLKNMTQLT ISDLRGKQMQ FPNLQGLRNM TRLTLRNCSI FGPIPRYVGD MPLKLLDLSN NMLNDTIPDT FEQLNFDNIN
301: LAASYSDTMN TFKNMDAWCS MKPLICPTEA KYTSLFINCG GGRTTFEGND YEEDKISSGP SYFSSSSDKW AFSTSGVYVG RVNASYIATN TFSLDVSGPD
401: FYNTARLAPN SLKYYGLCLR GGSYRVRLHF AEIMFSNDST YSSLGRRIFD VAIQGRVVLK DFNIMEKANG VGKGHTEDYD NITVSSTLEI HLYWTGKGTN
501: AIPERDFNTG NGLPVGAVIG IVLASIVVVL IVLFALWKKG IFGGKNNEEE LELRALDLQT GHFRLRQIKA ATNNFDPANK IGEGGFGPVY KGVLSDGAVI
601: AVKQLSSKSK QGNREFVNEI GMISALQHPN LVKLYGCCIE GNQLLVIYEY MENNCLARAL FGRDDQRLNL DWATRKRICS GIAKGLAYLH EESRLKIVHR
701: DIKCTNVLLD KDLNAKISDF GLAKLDEEEN THISTRIAGT VGYMAPEYAT RGYLTDKADV YSFGVVALEI VSGKSNTNYR PKEEFVYLLD WAYVLQEQGN
801: LLELVDSHLG SNYSKKEAMQ MINISLLCTN LSPTLRPSMS SVVSMLEGKL PVQAPIIKLT TSTNEMRFKS FEKVSHDSQT TYSQESQGQA PWNDSSGSGS
901: LPAKDEKFSS SSRLLPDLYD INID

Best Arabidopsis Sequence Match ( AT1G53430.2 )
(BLAST)

001: MAIQTLRTIF RKLQNQTVNI ERTSCSDQNW NFVVESASNS PTSNITCDCT FNASSVCRVT NIQLKSFSLP GIFPPEFGNL TRLREIDLSR NFLNGTIPTT
101: LSQIPLEILS VIGNRLSGPF PPQLGDITTL TDVNLETNLF TGPLPRNLGN LRSLKELLLS ANNFTGQIPE SLSNLKNLTE FRIDGNSLSG KIPDFIGNWT
201: LLERLDLQGT SMEGPIPPSI SNLTNLTELR ITDLRGQAAF SFPDLRNLMK MKRLGPIPEY IGSMSELKTL DLSSNMLTGV IPDTFRNLDA FNFMFLNNNS
301: LTGPVPQFII NSKENLDLSD NNFTQPPTLS CNQLDVNLIS SYPSVTDNSV QWCLREGLPC PEDAKQSSLF INCGGSRLKI GKDTYTDDLN SRGQSTFSSV
401: SERWGYSSSG VWLGKEDAGY LATDRFNLIN GSTPEYYKTA RLSPQSLKYY GLCLRRGSYK LQLHFAEIMF SNDQTFNSLG RRIFDIYVQG NLLERDFNIA
501: ERAGGVGKPF IRQIDGVQVN GSTLEIHLQW TGKGTNVIPT RGVYGPLISA ITITPNFKVD TGKPLSNGAV AGIVIAACAV FGLLVLVILR LTGYLGGKEV
601: DENEELRGLD LQTGSFTLKQ IKRATNNFDP ENKIGEGGFG PVYKGVLADG MTIAVKQLSS KSKQGNREFV TEIGMISALQ HPNLVKLYGC CIEGKELLLV
701: YEYLENNSLA RALFGTEKQR LHLDWSTRNK ICIGIAKGLA YLHEESRLKI VHRDIKATNV LLDLSLNAKI SDFGLAKLND DENTHISTRI AGTIGYMAPE
801: YAMRGYLTDK ADVYSFGVVC LEIVSGKSNT NYRPKEEFVY LLDWAYVLQE QGSLLELVDP DLGTSFSKKE AMRMLNIALL CTNPSPTLRP PMSSVVSMLE
901: GKIKVQPPLV KREADPSGSA AMRFKALELL SQDSESQVST YARNREQDIS SSSMDGPWVD SSFSEPGKDV SLQQQEEGRS SSSSRKLLDD LTDVKIE

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At1g53430 [Source:UniProtKB/Swiss-Prot;Acc:C0LGG8]
SUBAcon: [mitochondrion,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.