Factsheet for VIT_10s0003g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073238	Potato	cytosol, nucleus, plasma membrane	49.69	61.92
Solyc02g071880.2.1	Tomato	plasma membrane	61.95	59.9
VIT_10s0003g01920.t01	Wine grape	plasma membrane	58.42	59.28
KRH21191	Soybean	plasma membrane	60.71	57.48
KRH59039	Soybean	plasma membrane	58.73	57.42
VIT_10s0003g02020.t01	Wine grape	mitochondrion, plasma membrane, plastid	27.75	56.69
VIT_10s0003g01860.t01	Wine grape	plastid, vacuole	40.44	56.62
VIT_19s0014g00530.t01	Wine grape	plasma membrane	27.86	54.36
VIT_10s0003g02000.t01	Wine grape	plasma membrane	40.54	53.87
CDY35279	Canola	plasma membrane	55.72	52.86
CDX90208	Canola	plasma membrane	55.51	52.66
GSMUA_Achr6P25980_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	31.81	52.22
VIT_19s0014g00750.t01	Wine grape	plasma membrane	25.68	51.89
AT1G29750.2	Thale cress	plasma membrane	54.68	51.52
CDY26316	Canola	plasma membrane	54.37	51.43
CDX99850	Canola	plasma membrane	54.37	51.43
VIT_10s0003g01990.t01	Wine grape	plasma membrane	48.75	51.09
VIT_19s0014g00470.t01	Wine grape	plasma membrane	53.22	50.84
VIT_19s0014g00520.t01	Wine grape	plasma membrane	53.33	50.74
Bra032333.1-P	Field mustard	plasma membrane	42.0	49.69
VIT_19s0014g00500.t01	Wine grape	plasma membrane	52.7	49.51
VIT_10s0003g01940.t01	Wine grape	plasma membrane, plastid, vacuole	40.02	49.17
VIT_19s0014g00790.t01	Wine grape	cytosol, nucleus, plasma membrane	43.56	47.61
VIT_12s0028g01350.t01	Wine grape	plasma membrane	49.17	46.79
VIT_10s0003g01980.t01	Wine grape	cytosol	48.02	45.56
VIT_19s0014g00680.t01	Wine grape	plasma membrane	48.34	45.54
VIT_00s0125g00210.t01	Wine grape	cytosol	27.13	43.72
VIT_19s0014g00810.t01	Wine grape	plasma membrane, plastid	45.22	42.65
VIT_10s0092g00470.t01	Wine grape	cytosol	40.54	39.31
VIT_10s0092g00710.t01	Wine grape	plasma membrane	39.4	37.79
VIT_10s0092g00590.t01	Wine grape	plasma membrane	41.16	37.79
VIT_12s0055g00580.t01	Wine grape	plasma membrane	39.81	37.15
VIT_00s0125g00140.t01	Wine grape	cytosol	26.61	36.73
VIT_00s0125g00090.t01	Wine grape	plasma membrane	38.15	36.7
VIT_10s0003g01900.t01	Wine grape	plasma membrane	45.95	29.25
VIT_19s0014g00830.t01	Wine grape	plasma membrane	48.75	28.63
VIT_12s0055g00590.t01	Wine grape	plasma membrane	39.81	18.19

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.8.2	Gene3D:2.60.120.430	Gene3D:3.30.200.20	Gene3D:3.80.10.10	ProteinID:CCB55718
ProteinID:CCB55718.1	UniProt:F6HMD0	EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_dom_sf	InterPro:Malectin	PFAM:PF07714
PFAM:PF11721	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27006	PANTHER:PTHR27006:SF55	InterPro:Prot_kinase_dom
SMART:SM00220	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix
UniParc:UPI000210851D	ArrayExpress:VIT_10s0003g01880	EnsemblPlantsGene:VIT_10s0003g01880	EnsemblPlants:VIT_10s0003g01880.t01	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:3358624..3390561

Molecular Weight (calculated)

107363.0 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.153

Length

962 amino acids

Sequence
(BLAST)

001: MGATYWKFDG DSCQIETVGL TPQPPRGSEQ NIICNNFLEK NNTALHVVSI MLKGYNLPGV LPPELVELQY LQEIDFAYNY LGGTIPPEWA SAQLSSISVL
101: ANRLSGEIPK ELGNITSLTY LNLEANQFSG IVPPVLGDLI NLKTLILSSN QFFGNLPTTL AGLRSLTDFR INDNNLSGPI PEFIQNWKQL TRIEMHASGL
201: EGPIPSNISL LDKLIQLRIS DINGTTQAFP MLIKMTGIVR LILRNCKISG EIPAYIWKMK YLEMLDVSFN NLVGEIPNDI SSAKALNFIY LSSNLLSGNV
301: PDLFLKKGSS IDLSYNNLSW QGPGQPTCQE NMNLNLNLYR SSSMENNLRA VLPCSRNVNC PRYVCSFYIN CGGNDLTIKE RRGKVVYQGD AKIEGGAANY
401: YTSNSYWGLS SSGDFMDDNN FQNTRYIETL SSGNISGVYT TARLSPLSLT YFGYCLENGI YTLQLHFTEI YFTDDKTYNS LGKRLFDIYI QEKLVHKNFN
501: IEDEAHGARN PVMKQFNASV INNILEIRFY WAGKGTTRIP YRGVYGPLIS AISVYPNFKS CSSSRKEETN AYIIGGVVGL FIIFLILGLL AWKGCLRGKK
601: KEEKAYISMF PSWIDLEGLD MQTGSFTLKQ IKAATKNFDF ANKIGEGGFG PVYKGLLSDG TIVAVKQLSS ISRQGNREFL NEIAMISCLQ HPNLVKLHGC
701: CVEGDQLLLV YEYMENNSLA GALFGPENGL PNLDWPTRLK ICIGIAKGLA FLHEESRIKI VHRDIKATNV LLDRDLNPKI SDFGLARLDE GEKSHISTRV
801: AGTIGYMAPE YALWGYLTYK ADVYSFGIVA LEIACLLQQS RKFLELVDEK LGSKVNEEEA ERMIKVALLC TNASQSLRPT MSEVVSMLEA RMPIPDMIPG
901: PSTYTEDLRF KAMRDFRQDK RNQSLSEGRQ SLNLTGHTEL ELCSTSTSGP EFYEINPHSE SC

Best Arabidopsis Sequence Match ( AT1G29750.1 )
(BLAST)

0001: MIVKAKKSVI LVVAQVIELI FYDVCFCVCS LVDALQQIAT TLGSKFWKFD AENCKIEMVG LTETPPPTAK QEIECECSPT NDTDCHVVKF AFKDHNLPGT
0101: LPQIVKLPYL REIDLAYNYI NGTLPREWAS SNLTFISLLV NRLSGEIPKE FGNSSLTYLD LESNAFSGTI PQELGNLVHL KKLLLSSNKL TGTLPASLAR
0201: LQNMTDFRIN DLQLSGTIPS YIQNWKQLER LEMIASGLTG PIPSVISVLS NLVNLRISDI RGPVQPFPSL KNVTGLTKII LKNCNISGQI PTYLSHLKEL
0301: ETLDLSFNKL VGGIPSFAQA ENLRFIILAG NMLEGDAPDE LLRDGITVDL SYNNLKWQSP ESRACRPNMN LNLNLFQSTS TKKSSKFLPC IKDFKCPRYS
0401: SCLHVNCGGS DMYVKEKKTK ELYEGDGNVE GGAAKYFLKP DANWGFSSTG DFMDDNNFQN TRFTMFVPAS NQSDLYKSAR IAPVSLTYFH ACLENGNYTI
0501: NLDFAEIRFT NDENYNRLGR RLFDIYIQEK LVAKDFNIMD EAKGAQTPII KPLTAYVTNH FLTIRLSWAG KGTTRIPTRG VYGPIISAIS IVSDSKPCER
0601: PKTGMSPGAY IAIGIGAPCL IIFILGFLWI CGCLPRCGRQ RKDPYEEELP SGTFTLRQIK FATDDFNPTN KIGEGGFGAV FKGVLADGRV VAVKQLSSKS
0701: RQGNREFLNE IGAISCLQHP NLVKLHGFCV ERAQLLLAYE YMENNSLSSA LFSPKHKQIP MDWPTRFKIC CGIAKGLAFL HEESPLKFVH RDIKATNILL
0801: DKDLTPKISD FGLARLDEEE KTHISTKVAG TIGYMAPEYA LWGYLTFKAD VYSFGVLVLE IVAGITNSNF MGAGDSVCLL EFANECVESG HLMQVVDERL
0901: RPEVDRKEAE AVIKVALVCS SASPTDRPLM SEVVAMLEGL YPVPESTPGV SRNAGDIRFK AFKDLRRGME NNSKTQCSVK SYPSSSSTSS GAGQAVQERK
1001: KEESRP

Arabidopsis Description

RKF1Probable LRR receptor-like serine/threonine-protein kinase RFK1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXF2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.