Factsheet for VIT_10s0003g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01940.t01	Wine grape	plasma membrane, plastid, vacuole	35.8	69.09
VIT_10s0003g02000.t01	Wine grape	plasma membrane	31.24	65.19
VIT_10s0003g01980.t01	Wine grape	cytosol	43.22	64.4
VIT_10s0003g02020.t01	Wine grape	mitochondrion, plasma membrane, plastid	18.93	60.72
VIT_10s0003g01920.t01	Wine grape	plasma membrane	37.79	60.23
GSMUA_Achr6P25980_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	20.91	53.92
VIT_19s0014g00750.t01	Wine grape	plasma membrane	16.74	53.15
Solyc02g071810.2.1	Tomato	endoplasmic reticulum	35.08	52.48
Solyc02g071820.2.1	Tomato	nucleus, plasma membrane	33.49	51.16
VIT_19s0014g00530.t01	Wine grape	plasma membrane	16.55	50.71
Solyc02g071860.2.1	Tomato	extracellular	33.09	50.25
VIT_10s0003g01990.t01	Wine grape	plasma membrane	30.51	50.22
VIT_10s0003g01860.t01	Wine grape	plastid, vacuole	22.24	48.91
VIT_19s0014g00470.t01	Wine grape	plasma membrane	32.3	48.46
VIT_12s0028g01350.t01	Wine grape	plasma membrane	32.3	48.27
VIT_19s0014g00500.t01	Wine grape	plasma membrane	32.43	47.85
VIT_19s0014g00520.t01	Wine grape	plasma membrane	31.44	46.98
VIT_10s0003g01880.t01	Wine grape	cytosol	29.25	45.95
VIT_19s0014g00790.t01	Wine grape	cytosol, nucleus, plasma membrane	26.47	45.45
VIT_00s0125g00210.t01	Wine grape	cytosol	17.27	43.72
VIT_19s0014g00680.t01	Wine grape	plasma membrane	28.86	42.7
VIT_19s0014g00810.t01	Wine grape	plasma membrane, plastid	27.93	41.37
VIT_10s0092g00470.t01	Wine grape	cytosol	23.49	35.79
VIT_00s0125g00140.t01	Wine grape	cytosol	16.41	35.58
VIT_12s0055g00580.t01	Wine grape	plasma membrane	23.43	34.34
VIT_10s0092g00590.t01	Wine grape	plasma membrane	23.49	33.87
VIT_00s0125g00090.t01	Wine grape	plasma membrane	22.3	33.7
VIT_10s0092g00710.t01	Wine grape	plasma membrane	22.37	33.7
VIT_19s0014g00830.t01	Wine grape	plasma membrane	32.49	29.98
VIT_12s0055g00590.t01	Wine grape	plasma membrane	23.63	16.96

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.8.2	Gene3D:2.60.120.430	Gene3D:3.30.200.20	Gene3D:3.80.10.10	ProteinID:CCB55720
ProteinID:CCB55720.1	UniProt:F6HMD2	EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_dom_sf	InterPro:Malectin	PFAM:PF00069
PFAM:PF07714	PFAM:PF11721	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27006
PANTHER:PTHR27006:SF54	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TIGR:TC55128	TMHMM:TMhelix	UniParc:UPI000210851F	ArrayExpress:VIT_10s0003g01900
EnsemblPlantsGene:VIT_10s0003g01900	EnsemblPlants:VIT_10s0003g01900.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:3402601..3422434

Molecular Weight (calculated)

167939.0 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.262

Length

1511 amino acids

Sequence
(BLAST)

0001: MSVSTSYDLS YNNFSWQGPE QPACQENMNL NVNLYRSSSM ENNLRAVLPC SKNDNCPQYA CSFHVNCGGD DLTIKESKRK VFYEGDAEVE GGTAKYFRSK
0101: NSYWGLSSTG DFMDDNNDQN MRYIETLSSG NISGVYTTAR LSPLSLTYFG YCLENGDYTL QLHFAEIYFT NDKTYDSLGK RLFDIYIQEQ LVHKDFNIED
0201: EARGARKPVM KQFNTSVTNN VLEIRFYWAG KGTTRIPSRG VYGPLISAIS VHPNFKSCSS SGKKGMTAYI IGGVVGLCII LLILGFLQWK GCLRGRKREE
0301: KDPEGLDLQT SSFTLKQIKN ATNNFDSANK IGEGGFGPVF KGLLSDGTTV AVKQLSSGSR QGDQLLLVYE YMENNSLARA LFGPENSQLI LDWPTRLKIC
0401: IGIAKGLAFL HEESRLKIVH RDIKATNVLL DRDLNPKISD FGLARLDDGG KSHISTRIAG TIGYMAPEYA LRGYLTYKAD VYSFGIVVLE IVSGKNNDYM
0501: PSNSCFCLLD WACHLQQSGK LLELVDEALG SEVREEEAEM MVKMAILCTN ASPSLRPTMS EVVSMLEGRK PTPDIILEPN SHNEDVRFKA IRDFRQEKRN
0601: QSLTGIQTQN STAPTELYYS SASGVDFCEI NPASKSYQAN SRREMATVVH IPLLILLLHT CFGSTSVEAL AGHLPDEEKG VLEEIAEQLG KKDWKFELNP
0701: CDGNSNWNTL GSRSNPFYNN TITCNCSFPN GECHVDSISL KGQDLAGVLP PALAKLSYLK KIDLARNYLS GNIPPEWETT KLETLSISMN RLSGRIPNFL
0801: GNITTLKNLG LEGNLFSGTV PPELGKLVDL QKLILNSNNL TGPLPQALAH LTNLKELRIS SNNFTGKIPS FIQSWKQLQQ LEIQASGLEG PIPSNISVLS
0901: NLTELCLIGN QLNGNIPDGI KGRQSRTELG GCLKNYPCQK GDQYEGGSAK FHPMTDYWGF SSTGHFWDHN RTINDYIAQN VSVLGMNHSE LYTRARLSPL
1001: SFTYYGRCLA DGNYTVKIHF AEIIIRGNKS FHSLGRRIFN VYIQGKLELE DFNIVQAAQG VDKVVVKEFK AVVKNKTLEI RFHWAGKGTT AIPSRGTYGP
1101: LISAISVESD FKPPSNGKKK ILIAVLVSVL VFIFTILGLI CWKCYFGQRT SREQELRGLD LQTGLFTLRQ IKAATNSFDA ANKIGEGGFG SVYKGTLLDG
1201: TIIAVKQLST KSKQGSREFV NEIGMISALQ HPNLVRLYGC CVEGNQLILV YEYMENNSLA RALFGKVEYR LNLDWSTRQR ICVGIARGLA FLHEGSTLKI
1301: VHRDIKANNI LLDTNLNPKI SDFGLAKLDE EDNTHISTRV AGTIGYMAPE YALWGYLTYK ADVYSFGVVA LELVAGKNNM KYRPNEDYFC LLDWAFVLQQ
1401: KGNLMELVDP NLGTEFKKEE AIRMIKVALL CTNASPALRP TMSAVVSMLK GQTVVQEYPL NPSIYGDEFG FEALRGQHDQ TQLQSSSEIE PLNHSSRTAR
1501: SGSSFTSSQD P

Best Arabidopsis Sequence Match ( AT1G07650.1 )
(BLAST)

0001: MIYLHRIYFI IVLFTLIFHG RLGFSDNNKL HEAEVRALKE IGKKLGKKDW DFNKDPCSGE GTWIVTTYTT KGFESNITCD CSFLPQNSSC HVIRIALKSQ
0101: NLTGIVPPEF SKLRHLKVLD LSRNSLTGSI PKEWASMRLE DLSFMGNRLS GPFPKVLTRL TMLRNLSLEG NQFSGPIPPD IGQLVHLEKL HLPSNAFTGP
0201: LTEKLGLLKN LTDMRISDNN FTGPIPDFIS NWTRILKLQM HGCGLDGPIP SSISSLTSLT DLRISDLGGK PSSFPPLKNL ESIKTLILRK CKIIGPIPKY
0301: IGDLKKLKTL DLSFNLLSGE IPSSFENMKK ADFIYLTGNK LTGGVPNYFV ERNKNVDVSF NNFTDESSIP SHDCNRVTSN LVESFALGNK SHKGSTCFLQ
0401: RMPCVHPKRY HLYKLYINCG GGEVKVDKEI TYQADDEPKG ASMYVLGANK RWALSSTGNF MDNDDDADEY TVQNTSRLSV NASSPSFGLY RTARVSPLSL
0501: TYYGICLGNG NYTVNLHFAE IIFTDDNTLY SLGKRLFDIY VQDQLVIKNF NIQEAARGSG KPIIKSFLVN VTDHTLKIGL RWAGKGTTGI PIRGVYGPMI
0601: SAISVEPNFK PPVYYDTKDI ILKVGVPVAA ATLLLFIIVG VFWKKRRDKN DIDKELRGLD LQTGTFTLRQ IKAATDNFDV TRKIGEGGFG SVYKGELSEG
0701: KLIAVKQLSA KSRQGNREFV NEIGMISALQ HPNLVKLYGC CVEGNQLILV YEYLENNCLS RALFGKDESS RLKLDWSTRK KIFLGIAKGL TFLHEESRIK
0801: IVHRDIKASN VLLDKDLNAK ISDFGLAKLN DDGNTHISTR IAGTIGYMAP EYAMRGYLTE KADVYSFGVV ALEIVSGKSN TNFRPTEDFV YLLDWAYVLQ
0901: ERGSLLELVD PTLASDYSEE EAMLMLNVAL MCTNASPTLR PTMSQVVSLI EGKTAMQELL SDPSFSTVNP KLKALRNHFW QNELSRSLSF STSGPRTASA
1001: NSLVDAEEKT GLLD

Arabidopsis Description

Leucine-rich repeat transmembrane protein kinase [Source:UniProtKB/TrEMBL;Acc:F4HSE1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.