Factsheet for VIT_10s0003g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

nucleus 3
plastid 3
vacuole 3
plasma membrane 3
cytosol 1
extracellular 2
endoplasmic reticulum 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g02020.t01	Wine grape	mitochondrion, plasma membrane, plastid	39.59	57.75
GSMUA_Achr6P25980_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	44.98	52.73
VIT_19s0014g00750.t01	Wine grape	plasma membrane	36.24	52.31
VIT_19s0014g00530.t01	Wine grape	plasma membrane	36.54	50.91
VIT_10s0003g02000.t01	Wine grape	plasma membrane	51.67	49.03
VIT_00s0125g00210.t01	Wine grape	cytosol	36.97	42.55
VIT_10s0003g01880.t01	Wine grape	cytosol	56.62	40.44
VIT_10s0003g01990.t01	Wine grape	plasma membrane	52.11	39.0
VIT_10s0003g01920.t01	Wine grape	plasma membrane	52.4	37.97
VIT_19s0014g00470.t01	Wine grape	plasma membrane	53.42	36.44
VIT_19s0014g00790.t01	Wine grape	cytosol, nucleus, plasma membrane	46.43	36.25
VIT_19s0014g00500.t01	Wine grape	plasma membrane	54.0	36.23
VIT_19s0014g00520.t01	Wine grape	plasma membrane	53.28	36.2
VIT_10s0003g01940.t01	Wine grape	plasma membrane, plastid, vacuole	41.05	36.02
VIT_10s0003g01980.t01	Wine grape	cytosol	51.67	35.01
VIT_00s0125g00140.t01	Wine grape	cytosol	34.35	33.86
VIT_12s0028g01350.t01	Wine grape	plasma membrane	49.2	33.43
VIT_19s0014g00680.t01	Wine grape	plasma membrane	48.18	32.42
VIT_19s0014g00810.t01	Wine grape	plasma membrane, plastid	45.56	30.69
VIT_10s0092g00470.t01	Wine grape	cytosol	38.28	26.51
VIT_10s0092g00590.t01	Wine grape	plasma membrane	39.88	26.14
VIT_12s0055g00580.t01	Wine grape	plasma membrane	38.72	25.8
VIT_10s0092g00710.t01	Wine grape	plasma membrane	37.55	25.72
VIT_00s0125g00090.t01	Wine grape	plasma membrane	37.12	25.5
VIT_10s0003g01900.t01	Wine grape	plasma membrane	48.91	22.24
VIT_19s0014g00830.t01	Wine grape	plasma membrane	47.45	19.9
VIT_12s0055g00590.t01	Wine grape	plasma membrane	38.57	12.59

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100246406	wikigene:100246406	MapMan:18.4.1.8.2	Gene3D:2.60.120.430	Gene3D:3.30.200.20
EMBL:AM435340	ProteinID:CAN73789	ProteinID:CAN73789.1	ProteinID:CCB55716	ProteinID:CCB55716.1	UniProt:F6HMC8
EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100246406
wikigene:LOC100246406	InterPro:Malectin	PFAM:PF00069	PFAM:PF11721	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27006	PANTHER:PTHR27006:SF55	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
TMHMM:TMhelix	UniParc:UPI000210851B	ArrayExpress:VIT_10s0003g01860	EnsemblPlantsGene:VIT_10s0003g01860	EnsemblPlants:VIT_10s0003g01860.t01	RefSeq:XP_002264878
RefSeq:XP_002264878.2	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:3313424..3323165

Molecular Weight (calculated)

77152.1 Da

IEP (calculated)

6.468

GRAVY (calculated)

-0.383

Length

687 amino acids

Sequence
(BLAST)

001: MSHTVSYCFS CYQLNYFIRN LSVTFYHSNG LFWDISKEEE SRKMVKVNED KRSITYEGDT ARDNSDAKYY LSADNNNWGF SSSGDFMDDN NELNKDYIIT
101: SKSQISETLY NTARISPLSL TYFRYCLQNG SYSVRLHFAE IEFTNDSTYG SLGKRMFDIY AQDELVKKDF NIEDHAKGAL KPYTLPFNAT VTNNVLEIRF
201: YFAGRGTTRI PQRGVYGPLI SAISVDPNFT PPSEGGKTKT APIIIGVVAA CLICLALGIF WWRVNLRTKN GREKDFGGLD VHIGSFTLKQ IKAATNNFDS
301: LNQIGEGGFG PVYKGLLPDG TAIAVKQLSS KSTQGNREFL NEIGMISCLQ HPNLVKLHGC CIEGNQLLLV YEYMENNSLA RPENCQLKLD WPTRQKICVG
401: IARGLAFLHE ESRLKIVHRD IKGTNVLLDG DLNPKISDFG LAKLHEEEKT HISTRVAGTI GYMAPEYALW GYLTYKADVY SFGVVALEIV SGKHNMSYQP
501: KNDCACLLDW ACSLQQSGDI MELVDQKLGS EFNKKEAERM IKVALLCTNA SPSLRPNMSE AVSMLEGITT IPDAIPEAGS YSEDLRFKAI REYHKHTRSK
601: VLEISEVQAD STSGRQAWIQ STSASAHDLY DINMESYLRS RSTRQHNTEI ESHLSEGTQT EITSKHPWIS SSSTSGQDLY SFNLESH

Best Arabidopsis Sequence Match ( AT1G07650.1 )
(BLAST)

0001: MIYLHRIYFI IVLFTLIFHG RLGFSDNNKL HEAEVRALKE IGKKLGKKDW DFNKDPCSGE GTWIVTTYTT KGFESNITCD CSFLPQNSSC HVIRIALKSQ
0101: NLTGIVPPEF SKLRHLKVLD LSRNSLTGSI PKEWASMRLE DLSFMGNRLS GPFPKVLTRL TMLRNLSLEG NQFSGPIPPD IGQLVHLEKL HLPSNAFTGP
0201: LTEKLGLLKN LTDMRISDNN FTGPIPDFIS NWTRILKLQM HGCGLDGPIP SSISSLTSLT DLRISDLGGK PSSFPPLKNL ESIKTLILRK CKIIGPIPKY
0301: IGDLKKLKTL DLSFNLLSGE IPSSFENMKK ADFIYLTGNK LTGGVPNYFV ERNKNVDVSF NNFTDESSIP SHDCNRVTSN LVESFALGNK SHKGSTCFLQ
0401: RMPCVHPKRY HLYKLYINCG GGEVKVDKEI TYQADDEPKG ASMYVLGANK RWALSSTGNF MDNDDDADEY TVQNTSRLSV NASSPSFGLY RTARVSPLSL
0501: TYYGICLGNG NYTVNLHFAE IIFTDDNTLY SLGKRLFDIY VQDQLVIKNF NIQEAARGSG KPIIKSFLVN VTDHTLKIGL RWAGKGTTGI PIRGVYGPMI
0601: SAISVEPNFK PPVYYDTKDI ILKVGVPVAA ATLLLFIIVG VFWKKRRDKN DIDKELRGLD LQTGTFTLRQ IKAATDNFDV TRKIGEGGFG SVYKGELSEG
0701: KLIAVKQLSA KSRQGNREFV NEIGMISALQ HPNLVKLYGC CVEGNQLILV YEYLENNCLS RALFGKDESS RLKLDWSTRK KIFLGIAKGL TFLHEESRIK
0801: IVHRDIKASN VLLDKDLNAK ISDFGLAKLN DDGNTHISTR IAGTIGYMAP EYAMRGYLTE KADVYSFGVV ALEIVSGKSN TNFRPTEDFV YLLDWAYVLQ
0901: ERGSLLELVD PTLASDYSEE EAMLMLNVAL MCTNASPTLR PTMSQVVSLI EGKTAMQELL SDPSFSTVNP KLKALRNHFW QNELSRSLSF STSGPRTASA
1001: NSLVDAEEKT GLLD

Arabidopsis Description

Leucine-rich repeat transmembrane protein kinase [Source:UniProtKB/TrEMBL;Acc:F4HSE1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.