Factsheet for Solyc04g071610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 22892874
nucleus: 25464976
plastid: 26371478
extracellular: 29876421

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017059	Potato	cytosol, mitochondrion, nucleus	95.45	96.33
Solyc04g071580.2.1	Tomato	cytosol, mitochondrion, nucleus	75.45	72.81
Solyc04g071600.2.1	Tomato	cytosol, mitochondrion, nucleus	69.09	70.37
EES12153	Sorghum	nucleus	64.55	70.3
Solyc04g071590.1.1	Tomato	nucleus	67.27	68.52
KRH08687	Soybean	cytosol, mitochondrion, nucleus	69.09	68.47
TraesCS3D01G517600.1	Wheat	nucleus	53.64	64.84
Zm00001d025401_P001	Maize	nucleus	60.91	64.42
TraesCS3D01G517500.1	Wheat	nucleus	54.55	63.83
Zm00001d040787_P001	Maize	nucleus	59.09	63.73
Zm00001d040785_P001	Maize	nucleus	59.09	63.73
EES00725	Sorghum	nucleus	58.18	63.37
GSMUA_Achr6P25740_001	Banana	cytosol, mitochondrion, nucleus	59.09	63.11
TraesCS3A01G509700.1	Wheat	nucleus	53.64	62.77
EES06935	Sorghum	cytosol, mitochondrion, nucleus	60.91	62.62
TraesCS3D01G517700.1	Wheat	nucleus	52.73	61.7
Zm00001d016760_P001	Maize	cytosol, mitochondrion, nucleus	59.09	61.32
TraesCS3B01G578800.1	Wheat	nucleus	53.64	60.82
TraesCS3A01G509400.1	Wheat	nucleus	52.73	59.79
Os01t0959100-01	Rice	nucleus	51.82	59.38
TraesCS3D01G518000.1	Wheat	nucleus	51.82	58.76
TraesCS3B01G456200.1	Wheat	nucleus	51.82	57.0
TraesCS3D01G518100.1	Wheat	nucleus	49.09	54.0
Os01t0959200-01	Rice	nucleus	56.36	53.45
TraesCS3A01G509200.1	Wheat	nucleus	51.82	51.82
TraesCS3A01G509500.1	Wheat	nucleus	51.82	51.82
TraesCS3A01G510700.1	Wheat	nucleus	51.82	51.82
TraesCSU01G240200.1	Wheat	nucleus	51.82	51.82
HORVU3Hr1G112050.2	Barley	plastid	52.73	44.62
HORVU3Hr1G112060.2	Barley	cytosol	46.36	41.8
HORVU3Hr1G112080.1	Barley	cytosol, nucleus	48.18	39.85
VIT_18s0072g00380.t01	Wine grape	plastid	70.0	36.84
KRH35137	Soybean	nucleus	68.18	35.21
KRG91659	Soybean	nucleus	66.36	30.67

Protein Annotations

MapMan:35.2	InterPro:ABA_WDS	EMBL:AF093141	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006950	GO:GO:0008150
GO:GO:0008270	GO:GO:0009414	GO:GO:0009628	GO:GO:0032991	GO:GO:0042803	GO:GO:0043234
UniProt:O82575	PFAM:PF02496	PANTHER:PTHR33801	PANTHER:PTHR33801:SF7	EnsemblPlantsGene:Solyc04g071610.2	EnsemblPlants:Solyc04g071610.2.1
UniParc:UPI00000A86AB	SEG:seg	:	:	:	:

Description

Fruit-ripening protein [Source:UniProtKB/TrEMBL;Acc:O82575]

Coordinates

chr4:+:58578437..58580303

Molecular Weight (calculated)

12555.6 Da

IEP (calculated)

7.005

GRAVY (calculated)

-1.273

Length

110 amino acids

Sequence
(BLAST)

001: MEEEKHHHHH LFHHKDKAEE GPVDYEKEIK HHKHLEQIGK LGTVAAGAYA LHEKHEAKKD PEHAHKHKIE EEIAAAAAVG AGGFAFHEHH EKKDAKKEEK
101: KAEGGHHHLF

Best Arabidopsis Sequence Match ( AT1G68890.2 )
(BLAST)

0001: MLNRETEVSN FLRDEANINA VWASAIIEEC TRLGLTYFCV APGSRSSHLA IAAANHPLTT CLACFDERSL AFHAIGYAKG SLKPAVIITS SGTAVSNLLP
0101: AVVEASEDFL PLLLLTADRP PELQGVGANQ AINQINHFGS FVRFFFNLPP PTDLIPVRMV LTTVDSALHW ATGSACGPVH LNCPFRDPLD GSPTNWSSNC
0201: LNGLDMWMSN AEPFTKYFQV QSHKSDGVTT GQITEILQVI KEAKKGLLLI GAIHTEDEIW ASLLLAKELM WPVVADVLSG VRLRKLFKPF VEKLTHVFVD
0301: HLDHALFSDS VRNLIEFDVV IQVGSRITSK RVSQMLEKCF PFAYILVDKH PCRHDPSHLV THRVQSNIVQ FANCVLKSRF PWRRSKLHGH LQALDGAIAR
0401: EMSFQISAES SLTEPYVAHM LSKALTSKSA LFIGNSMPIR DVDMYGCSSE NSSHVVDMML SAELPCQWIQ VTGNRGASGI DGLLSSATGF AVGCKKRVVC
0501: VVGDISFLHD TNGLAILKQR IARKPMTILV INNRGGGIFR LLPIAKKTEP SVLNQYFYTA HDISIENLCL AHGVRYVHVG TKSELEDALF VPSVEEMDCI
0601: VEVESSINAN AIVHSTLERF ARQAAENSLG IVSASSFLHP MIKNVLLCQV SGIQYSQYRV KLCDRPTICS DEFSQFHREG FILSLTLEDG SIGYGEVAPL
0701: NSNVENLMDV EGQLQLVLHL MNEAKFSYML PLLNGSISSW IWSELGITAS SIFPSVRCGL EMALLNAMAV RHDSSLLGIL HYQKEENGSA QPHSVQICAL
0801: LDSEGTPLEV AYVARKLVQE GFSAIKLKVG RRVSSVQDAL VMQEVRRAVG VQIELRADAN CRWTFEEARE FGLLVNSCNL KYIEEPVQNK DDLIRFHEET
0901: GLPVALDETL DDFEECPLRM LTKYTHPGIV AVVIKPSVVG GFENAALIAR WAQQHGKMAV ISAAYESGLG LSAYILFASY LEMENVKAST EQKQGTPPSV
1001: AHGLGTYRWL SEDVMMNTLG IFRSPYSGFV EGFIADASRN LKDVKINNDV IVRTSKGIPV RRYELRVDVD GFSHFIRVHD VGENAEGSVA LFLHGFLGTG
1101: EEWIPIMTGI SGSARCISVD IPGHGRSRVQ SHASETQTSP TFSMEMIAEA LYKLIEQITP GKVTIVGYSM GARIALYMAL RFSNKIEGAV VVSGSPGLKD
1201: PVARKIRSAT DDSKARMMVD NGLYIFIENW YNGGLWKSLR NHPHFSKIAA SRLLHGDVPS VAKLLSDLSS GRQPSLWEEL EDCDTNISLV FGEKDVKYKQ
1301: IATRMYREMS KSKKSVNNII EIVEIPEAGH AVHLESPLRV ILALRKFLTR VHNSSTETEL SQKLLLALKE M

Arabidopsis Description

PHYLLOProtein PHYLLO, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q15KI9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.