Factsheet for VIT_18s0072g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061912	Potato	cytosol, mitochondrion, nucleus	36.84	71.3
PGSC0003DMT400017059	Potato	cytosol, mitochondrion, nucleus	36.84	70.64
Solyc04g071610.2.1	Tomato	extracellular	36.84	70.0
GSMUA_Achr6P25740_001	Banana	cytosol, mitochondrion, nucleus	33.97	68.93
Solyc04g071580.2.1	Tomato	cytosol, mitochondrion, nucleus	37.32	68.42
EES12153	Sorghum	nucleus	33.01	68.32
Solyc04g071600.2.1	Tomato	cytosol, mitochondrion, nucleus	34.45	66.67
Solyc04g071590.1.1	Tomato	nucleus	34.45	66.67
PGSC0003DMT400017061	Potato	cytosol, mitochondrion, nucleus	34.45	64.86
TraesCS3D01G517600.1	Wheat	nucleus	27.75	63.74
Zm00001d025401_P001	Maize	nucleus	31.58	63.46
EES00725	Sorghum	nucleus	30.14	62.38
Zm00001d040785_P001	Maize	nucleus	30.14	61.76
TraesCS3A01G509700.1	Wheat	nucleus	27.75	61.7
TraesCS3B01G578800.1	Wheat	nucleus	28.23	60.82
Zm00001d040787_P001	Maize	nucleus	29.67	60.78
TraesCS3D01G517700.1	Wheat	nucleus	27.27	60.64
TraesCS3D01G517500.1	Wheat	nucleus	27.27	60.64
Os01t0959100-01	Rice	nucleus	27.75	60.42
TraesCS3A01G509400.1	Wheat	nucleus	27.75	59.79
Zm00001d016760_P001	Maize	cytosol, mitochondrion, nucleus	30.14	59.43
EES06935	Sorghum	cytosol, mitochondrion, nucleus	30.14	58.88
TraesCS3D01G518000.1	Wheat	nucleus	27.27	58.76
TraesCS3B01G456200.1	Wheat	nucleus	27.27	57.0
TraesCS3D01G518100.1	Wheat	nucleus	26.32	55.0
TraesCS3A01G510700.1	Wheat	nucleus	27.27	51.82
TraesCS3A01G509500.1	Wheat	nucleus	27.27	51.82
TraesCS3A01G509200.1	Wheat	nucleus	27.27	51.82
TraesCSU01G240200.1	Wheat	nucleus	27.27	51.82
Os01t0959200-01	Rice	nucleus	27.75	50.0
HORVU3Hr1G112050.2	Barley	plastid	28.71	46.15
KRH35137	Soybean	nucleus	44.02	43.19
HORVU3Hr1G112080.1	Barley	cytosol, nucleus	25.36	39.85
KRG91659	Soybean	nucleus	44.98	39.5
HORVU3Hr1G112060.2	Barley	cytosol	21.53	36.89
PGSC0003DMT400017057	Potato	extracellular, nucleus	40.67	27.78

Protein Annotations

EntrezGene:100250281	wikigene:100250281	MapMan:35.2	ProteinID:AAK69513	ProteinID:AAK69513.1	ProteinID:AAZ93634
ProteinID:AAZ93634.1	InterPro:ABA_WDS	EMBL:AF281656	ProteinID:CCB44882	ProteinID:CCB44882.1	EMBL:DQ139800
UniProt:F6GY46	EMBL:FN594968	GO:GO:0006950	GO:GO:0008150	EntrezGene:LOC100250281	wikigene:LOC100250281
PFAM:PF02496	PANTHER:PTHR33801	PANTHER:PTHR33801:SF7	TIGR:TC65921	TIGR:TC69388	UniParc:UPI000210838C
ArrayExpress:VIT_18s0072g00380	EnsemblPlantsGene:VIT_18s0072g00380	EnsemblPlants:VIT_18s0072g00380.t01	RefSeq:XP_002265590	RefSeq:XP_002265590.2	RefSeq:XP_003634514
RefSeq:XP_003634514.1	RefSeq:XP_003634515	RefSeq:XP_003634515.1	RefSeq:XP_003634516	RefSeq:XP_003634516.1	RefSeq:XP_003634517
RefSeq:XP_003634517.1	RefSeq:XP_003634518	RefSeq:XP_003634518.1	RefSeq:XP_003634519	RefSeq:XP_003634519.1	RefSeq:XP_003634520
RefSeq:XP_003634520.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:19583511..19584489

Molecular Weight (calculated)

23189.6 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.868

Length

209 amino acids

Sequence
(BLAST)

001: MVNGEAPPIR AIPNTHSSLP RSLDTFATSI YKYPTTHHCT LPHHTFTVHK PSSSLVSAAN LITTTMSEEK HHHHLFHHKD KPVDDAVPYS DTTYSDTSYA
101: TDGVSGYAAE TTEVLADDPG PDYRKEEKHH KHLEHLGELG VAAAGAYALH EKHKSEKDPE HAHKHKIEEE IAAAAAVGAG GFAFHEHHEK KEAKEEDEEA
201: HGKKHHHLF

Best Arabidopsis Sequence Match ( AT5G06420.1 )
(BLAST)

001: MEPFVVKENI VASASSPMKK RRIDHTESAD GSAINASNSS SIGGNDTVMN MAEFGNDNSN NQESQQVCTF FKKPTKSKNI RKRTIDADEE DGDSKSESSI
101: LQNLKKVAKP DSNLYFSSGP STRTSGAPER PVFHYDSSKE IQVQNDSGAT ATLETETDFN QDARAIRERV LKKADHALKG NKKKASDEKL YKGIHGYTDH
201: KAGFRREQTI SSEKAGGSHG PLRASAHIRV SARFDYQPDI CKDYKETGYC GYGDSCKFLH DRGDYKPGWQ IEKEWEEAEK VRKRNKAMGV EDDDDEADKD
301: SDEDENALPF ACFICREPFL DPVVTKCKHY FCEHCALKHH TKNKKCFVCN QPTMGIFNAA HEIKKRMAEE RSKAEQGL

Arabidopsis Description

Zinc finger CCCH domain-containing protein 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.