CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016760_P001	Maize	cytosol, mitochondrion, nucleus	88.78	89.62
EES12153	Sorghum	nucleus	73.83	78.22
GSMUA_Achr6P25740_001	Banana	cytosol, mitochondrion, nucleus	62.62	65.05
PGSC0003DMT400061912	Potato	cytosol, mitochondrion, nucleus	65.42	64.81
EES00725	Sorghum	nucleus	59.81	63.37
Solyc04g071600.2.1	Tomato	cytosol, mitochondrion, nucleus	63.55	62.96
Solyc04g071590.1.1	Tomato	nucleus	63.55	62.96
Solyc04g071580.2.1	Tomato	cytosol, mitochondrion, nucleus	66.36	62.28
PGSC0003DMT400017061	Potato	cytosol, mitochondrion, nucleus	63.55	61.26
Solyc04g071610.2.1	Tomato	extracellular	62.62	60.91
PGSC0003DMT400017059	Potato	cytosol, mitochondrion, nucleus	61.68	60.55
KRH08687	Soybean	cytosol, mitochondrion, nucleus	59.81	57.66
KXG23047	Sorghum	cytosol, mitochondrion, nucleus	57.01	42.07
EES09340	Sorghum	cytosol, mitochondrion, nucleus	52.34	41.79
KRH35137	Soybean	nucleus	61.68	30.99
VIT_18s0072g00380.t01	Wine grape	plastid	58.88	30.14
KRG91659	Soybean	nucleus	59.81	26.89
PGSC0003DMT400017057	Potato	extracellular, nucleus	60.75	21.24
EES12155	Sorghum	nucleus	51.4	20.45

Protein Annotations

EnsemblPlants:EES06935	EnsemblPlantsGene:SORBI_3004G171000	EntrezGene:8064244	GO:GO:0006950	GO:GO:0008150	InterPro:ABA_WDS
PANTHER:PTHR33801	PANTHER:PTHR33801:SF7	PFAM:PF02496	ProteinID:EES06935	ProteinID:EES06935.1	RefSeq:XP_002453959.1
SEG:seg	UniParc:UPI0001A85C15	UniProt:C5XU45	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr4:-:52358175..52358919

Molecular Weight (calculated)

11911.8 Da

IEP (calculated)

7.628

GRAVY (calculated)

-1.230

Length

107 amino acids

Sequence
(BLAST)

001: MADEEKKHHH HLFHRHKQDG EEEASTGEVD YEKKEKHHKH LEQLGGLGAI AAGAYAIHEK HKAKKEPESA HGHKVKEEVA AVAALGAAGF AFHEHHQKKD
101: AKKQGQS

Best Arabidopsis Sequence Match ( AT2G24600.3 )
(BLAST)

001: MHPIFDAILQ NDLPAFLGLV EARESSLEER SEEQNTNNTV LHVAAKLGHR ELVAKIIELR PSLLSSRNAY GDTPLHLAAL LGDVNIVMQM LDTGLELYSA
101: RNNKNQTPLH LAFVSIFMEA AKFIVEKTNS VDLDELNFAL SSGSTCIVGI ILERFPELAR KNAWEVEDGS RSTLLHYACD KGDLELTSIL LGLNQGLEEA
201: LNSKGLSPLH LAVQRGSVII LEEFMDKSPL SFCVRTPSKE TVFHLAARNK NTDAFVFMAE NLGTSSPILL KKKDQQGNTV LHIAASVSCG SPLIRYIVGK
301: KIIDIRDRNN MGYRAYHLLP RQAQDYEFIS SYLRCDTKTS EEVDSKKAER NEPHIGHSEV IRLLKLIEIS TSEIAERKKS KKHHVKRGHK SLEHEMHIEA
401: LQNARNTIAI VAVLIASVSY AGGINPPGGV YQDGPWKGKS LVGNTAAFKV FAICNNIALF TSLCIVILLV SIIPYQRKPL KKLLVATHRM MWVSVGFMAT
501: AYVAASLVTI PHFPGTRWLF PVIISVAGGS LTVLFSYLGV ETISHWFKKM NRVGRGLPIY FIKNNRVEDI PAIAKNEGEM PSLARTNSDL AASEGSGYFT
601: Y

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:F4IPR3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.