CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P25740_001	Banana	cytosol, mitochondrion, nucleus	66.67	71.84
PGSC0003DMT400017059	Potato	cytosol, mitochondrion, nucleus	69.37	70.64
Solyc04g071610.2.1	Tomato	extracellular	68.47	69.09
PGSC0003DMT400061912	Potato	cytosol, mitochondrion, nucleus	66.67	68.52
Solyc04g071580.2.1	Tomato	cytosol, mitochondrion, nucleus	68.47	66.67
EES12153	Sorghum	nucleus	59.46	65.35
Solyc04g071590.1.1	Tomato	nucleus	62.16	63.89
Solyc04g071600.2.1	Tomato	cytosol, mitochondrion, nucleus	61.26	62.96
Zm00001d025401_P001	Maize	nucleus	57.66	61.54
Os01t0959100-01	Rice	nucleus	53.15	61.46
PGSC0003DMT400017061	Potato	cytosol, mitochondrion, nucleus	61.26	61.26
Zm00001d016760_P001	Maize	cytosol, mitochondrion, nucleus	57.66	60.38
EES06935	Sorghum	cytosol, mitochondrion, nucleus	57.66	59.81
EES00725	Sorghum	nucleus	54.05	59.41
TraesCS3D01G517600.1	Wheat	nucleus	48.65	59.34
Zm00001d040785_P001	Maize	nucleus	54.05	58.82
TraesCS3B01G578800.1	Wheat	nucleus	51.35	58.76
Zm00001d040787_P001	Maize	nucleus	53.15	57.84
TraesCS3A01G509400.1	Wheat	nucleus	50.45	57.73
TraesCS3A01G509700.1	Wheat	nucleus	48.65	57.45
TraesCS3D01G518000.1	Wheat	nucleus	49.55	56.7
TraesCS3D01G517500.1	Wheat	nucleus	47.75	56.38
TraesCS3D01G517700.1	Wheat	nucleus	46.85	55.32
TraesCS3B01G456200.1	Wheat	nucleus	49.55	55.0
TraesCS3D01G518100.1	Wheat	nucleus	47.75	53.0
TraesCS3A01G510700.1	Wheat	nucleus	50.45	50.91
TraesCS3A01G509500.1	Wheat	nucleus	50.45	50.91
TraesCS3A01G509200.1	Wheat	nucleus	50.45	50.91
TraesCSU01G240200.1	Wheat	nucleus	50.45	50.91
Os01t0959200-01	Rice	nucleus	53.15	50.86
KRH35137	Soybean	nucleus	81.98	42.72
HORVU3Hr1G112050.2	Barley	plastid	49.55	42.31
HORVU3Hr1G112060.2	Barley	cytosol	43.24	39.34
KRG91659	Soybean	nucleus	81.98	38.24
HORVU3Hr1G112080.1	Barley	cytosol, nucleus	45.05	37.59
PGSC0003DMT400017057	Potato	extracellular, nucleus	67.57	24.51

Protein Annotations

EMBL:ACUP02010194	EnsemblPlants:KRH08687	EnsemblPlantsGene:GLYMA_16G166600	GO:GO:0006950	GO:GO:0008150	InterPro:ABA_WDS
PANTHER:PTHR33801	PANTHER:PTHR33801:SF15	PFAM:PF02496	ProteinID:KRH08687	ProteinID:KRH08687.1	SEG:seg
UniParc:UPI000233C034	UniProt:I1MP65	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:32589393..32591093

Molecular Weight (calculated)

12626.6 Da

IEP (calculated)

6.861

GRAVY (calculated)

-1.308

Length

111 amino acids

Sequence
(BLAST)

001: MAEEKHHHHF HHHKGDDVPG EVDYKKEEKH HKHLEHLGEL GAAAAGAYAL HEKHEAKKDP EHAHRHKVEE EIAAAATVGA GGFVLHEHHE KKEVKKEDEE
101: AHGKKHHHLF G

Best Arabidopsis Sequence Match ( AT3G48070.2 )
(BLAST)

001: MISDSITNAS ATSAPTARDF GKKKRTNRSA KLKQSKLGLR REQWLSQVAM INKGDKEEME SNRRIGSEKP DQRDLPRPVE NLDEDNNGTH RHESFIESLS
101: NSPNSILSGM NSIPNFSSSS SSGSGGSCSG NITEEEDADD DGCLDDWEAI ADALAADDEK HEKENPPESC QEHEDIKQSA LIGGADVVLR DAKADSQRRK
201: QKSNQAWRPD DKLRPQGLPN LEKQRSFPVM NLHFSSVTVV PSSCPICYED LDLTDSNFLP CPCGFRLCLF CHKTICDGDG RCPGCRKPYE RNTIKFEASV
301: QGGGLTIRLA RSSSMFCRVV CEYIRWYTNF KYIKVAISLF LIACENLAYL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JCT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.