Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g071580.2.1 | Tomato | cytosol, mitochondrion, nucleus | 90.74 | 85.96 |
| PGSC0003DMT400017061 | Potato | cytosol, mitochondrion, nucleus | 87.96 | 85.59 |
| EES12153 | Sorghum | nucleus | 71.3 | 76.24 |
| PGSC0003DMT400017059 | Potato | cytosol, mitochondrion, nucleus | 75.0 | 74.31 |
| Zm00001d025401_P001 | Maize | nucleus | 67.59 | 70.19 |
| GSMUA_Achr6P25740_001 | Banana | cytosol, mitochondrion, nucleus | 64.81 | 67.96 |
| Zm00001d016760_P001 | Maize | cytosol, mitochondrion, nucleus | 65.74 | 66.98 |
| KRH08687 | Soybean | cytosol, mitochondrion, nucleus | 68.52 | 66.67 |
| EES06935 | Sorghum | cytosol, mitochondrion, nucleus | 64.81 | 65.42 |
| TraesCS3D01G517600.1 | Wheat | nucleus | 53.7 | 63.74 |
| TraesCS3A01G509700.1 | Wheat | nucleus | 54.63 | 62.77 |
| TraesCS3D01G517500.1 | Wheat | nucleus | 53.7 | 61.7 |
| EES00725 | Sorghum | nucleus | 57.41 | 61.39 |
| TraesCS3D01G517700.1 | Wheat | nucleus | 52.78 | 60.64 |
| Zm00001d040787_P001 | Maize | nucleus | 56.48 | 59.8 |
| Zm00001d040785_P001 | Maize | nucleus | 56.48 | 59.8 |
| Os01t0959100-01 | Rice | nucleus | 50.93 | 57.29 |
| TraesCS3B01G578800.1 | Wheat | nucleus | 50.93 | 56.7 |
| TraesCS3A01G509400.1 | Wheat | nucleus | 50.0 | 55.67 |
| TraesCS3D01G518000.1 | Wheat | nucleus | 48.15 | 53.61 |
| TraesCS3B01G456200.1 | Wheat | nucleus | 49.07 | 53.0 |
| TraesCS3D01G518100.1 | Wheat | nucleus | 46.3 | 50.0 |
| TraesCS3A01G509500.1 | Wheat | nucleus | 49.07 | 48.18 |
| TraesCS3A01G509200.1 | Wheat | nucleus | 49.07 | 48.18 |
| TraesCS3A01G510700.1 | Wheat | nucleus | 49.07 | 48.18 |
| TraesCSU01G240200.1 | Wheat | nucleus | 49.07 | 48.18 |
| Os01t0959200-01 | Rice | nucleus | 49.07 | 45.69 |
| HORVU3Hr1G112050.2 | Barley | plastid | 51.85 | 43.08 |
| VIT_18s0072g00380.t01 | Wine grape | plastid | 71.3 | 36.84 |
| HORVU3Hr1G112060.2 | Barley | cytosol | 40.74 | 36.07 |
| KRH35137 | Soybean | nucleus | 67.59 | 34.27 |
| HORVU3Hr1G112080.1 | Barley | cytosol, nucleus | 41.67 | 33.83 |
| KRG91659 | Soybean | nucleus | 66.67 | 30.25 |
| PGSC0003DMT400017057 | Potato | extracellular, nucleus | 73.15 | 25.82 |
Protein Annotations
| EMBL:U76611 | EnsemblPlants:PGSC0003DMT400061912 | EnsemblPlantsGene:PGSC0003DMG400024093 | EntrezGene:102583792 | GO:GO:0006950 | GO:GO:0008150 |
| InterPro:ABA_WDS | PANTHER:PTHR33801 | PANTHER:PTHR33801:SF7 | PFAM:PF02496 | PGSC:PGSC0003DMG400024093 | ProteinID:AAD00255 |
| ProteinID:AAD00255.1 | RefSeq:XP_006359804.1 | SEG:seg | UniParc:UPI00000A2CB0 | UniProt:Q9ZRB5 | MapMan:35.2 |
Description
Ci21B protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024093]
Coordinates
chr4:+:60138729..60139537
Molecular Weight (calculated)
12159.1 Da
IEP (calculated)
7.194
GRAVY (calculated)
-1.235
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEKHHHHL FHHKNKEEEG GPVDYEKEVK HHSHLEKIGE LGAVAAGAFA LHEKHKAKKD PENAHKHKIE EEIAAVAAVG AGGFAFHEHH QKKDSKKEKK
101: EAEGGHHY
101: EAEGGHHY
001: MISDSITNAS ATSAPTARDF GKKKRTNRSA KLKQSKLGLR REQWLSQVAM INKGDKEEME SNRRIGSEKP DQRDLPRPVE NLDEDNNGTH RHESFIESLS
101: NSPNSILSGM NSIPNFSSSS SSGSGGSCSG NITEEEDADD DGCLDDWEAI ADALAADDEK HEKENPPESC QEHEDIKQSA LIGGADVVLR DAKADSQRRK
201: QKSNQAWRPD DKLRPQGLPN LEKQRSFPVM NLHFSSVTVV PSSCPICYED LDLTDSNFLP CPCGFRLCLF CHKTICDGDG RCPGCRKPYE RNTIKFEASV
301: QGGGLTIRLA RSSSMFCRVV CEYIRWYTNF KYIKVAISLF LIACENLAYL
101: NSPNSILSGM NSIPNFSSSS SSGSGGSCSG NITEEEDADD DGCLDDWEAI ADALAADDEK HEKENPPESC QEHEDIKQSA LIGGADVVLR DAKADSQRRK
201: QKSNQAWRPD DKLRPQGLPN LEKQRSFPVM NLHFSSVTVV PSSCPICYED LDLTDSNFLP CPCGFRLCLF CHKTICDGDG RCPGCRKPYE RNTIKFEASV
301: QGGGLTIRLA RSSSMFCRVV CEYIRWYTNF KYIKVAISLF LIACENLAYL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JCT1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.