CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040785_P001	Maize	nucleus	84.16	83.33
Zm00001d040787_P001	Maize	nucleus	81.19	80.39
EES12153	Sorghum	nucleus	65.35	65.35
EES06935	Sorghum	cytosol, mitochondrion, nucleus	63.37	59.81
GSMUA_Achr6P25740_001	Banana	cytosol, mitochondrion, nucleus	60.4	59.22
PGSC0003DMT400017059	Potato	cytosol, mitochondrion, nucleus	63.37	58.72
Solyc04g071610.2.1	Tomato	extracellular	63.37	58.18
Os01t0959200-01	Rice	nucleus	66.34	57.76
PGSC0003DMT400061912	Potato	cytosol, mitochondrion, nucleus	61.39	57.41
Solyc04g071600.2.1	Tomato	cytosol, mitochondrion, nucleus	61.39	57.41
Solyc04g071580.2.1	Tomato	cytosol, mitochondrion, nucleus	63.37	56.14
PGSC0003DMT400017061	Potato	cytosol, mitochondrion, nucleus	61.39	55.86
Solyc04g071590.1.1	Tomato	nucleus	59.41	55.56
KRH08687	Soybean	cytosol, mitochondrion, nucleus	59.41	54.05
HORVU3Hr1G112060.2	Barley	cytosol	55.45	45.9
HORVU3Hr1G112080.1	Barley	cytosol, nucleus	56.44	42.86
EES09340	Sorghum	cytosol, mitochondrion, nucleus	53.47	40.3
KXG23047	Sorghum	cytosol, mitochondrion, nucleus	55.45	38.62
VIT_18s0072g00380.t01	Wine grape	plastid	62.38	30.14
KRH35137	Soybean	nucleus	63.37	30.05
KRG91659	Soybean	nucleus	62.38	26.47
EES12155	Sorghum	nucleus	54.46	20.45
PGSC0003DMT400017057	Potato	extracellular, nucleus	60.4	19.93

Protein Annotations

EnsemblPlants:EES00725	EnsemblPlantsGene:SORBI_3003G158600	EntrezGene:8075332	GO:GO:0006950	GO:GO:0008150	InterPro:ABA_WDS
PANTHER:PTHR33801	PANTHER:PTHR33801:SF2	PFAM:PF02496	ProteinID:EES00725	ProteinID:EES00725.1	RefSeq:XP_002455605.1
SEG:seg	unigene:Sbi.6260	UniParc:UPI00016F0E91	UniProt:C5XJW4	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr3:+:18206542..18206847

Molecular Weight (calculated)

11270.3 Da

IEP (calculated)

10.531

GRAVY (calculated)

-1.135

Length

101 amino acids

Sequence
(BLAST)

001: MAHHFLGSKH HGGEASKVTD WRKEEKHHKH MEQLGQLGAV AAGAYAVHEK HKAKKDPEHA HSHKIKEGVA AAVAVGSAGF AFHEHHQKKD AKKHRRHGHH
101: H

Best Arabidopsis Sequence Match ( AT3G07050.1 )
(BLAST)

001: MVKRSKKSKS KRVTLKQKHK VLKKVKEHHK KKAKDAKKLG LHRKPRVEKD PGIPNDWPFK EQELKALEVR RARALEEIEQ KKEARKERAK KRKLGLVDDE
101: DTKTEGETIE DLPKVVNVRD NSERAFYKEL VKVIELSDVI LEVLDARDPL GTRCTDMERM VMQAGPNKHL VLLLNKIDLV PREAAEKWLM YLREEFPAVA
201: FKCSTQEQRS NLGWKSSKAS KPSNMLQTSD CLGADTLIKL LKNYSRSHEL KKSITVGIIG LPNVGKSSLI NSLKRAHVVN VGATPGLTRS LQEVHLDKNV
301: KLLDCPGVVM LKSSGNDASI ALRNCKRIEK LDDPVSPVKE ILKLCPKDML VTLYKIPSFE AVDDFLYKVA TVRGKLKKGG LVDIDAAARI VLHDWNEGKI
401: PYYTMPPKRD QGGHAESKIV TELAKDFNID EVYSGESSFI GSLKTVNEFN PVIIPSNGPL NFDETMIEDE SKTQTEEEAE HESDDDESMG GEEEEEAGKT
501: KEKSETGRQN VKLYAAESML NTKKQKAEKK KRKKAKKAGA DEEDLMDGDY DFKVDYRKNK DGEDEEFQID AKIPMAGLLP EE

Arabidopsis Description

NSN1Guanine nucleotide-binding protein-like NSN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.