Factsheet for PGSC0003DMT400017057

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061912	Potato	cytosol, mitochondrion, nucleus	25.82	73.15
KRH08687	Soybean	cytosol, mitochondrion, nucleus	24.51	67.57
PGSC0003DMT400017059	Potato	cytosol, mitochondrion, nucleus	23.53	66.06
PGSC0003DMT400017061	Potato	cytosol, mitochondrion, nucleus	23.53	64.86
GSMUA_Achr6P25740_001	Banana	cytosol, mitochondrion, nucleus	21.57	64.08
EES12153	Sorghum	nucleus	20.91	63.37
Zm00001d016760_P001	Maize	cytosol, mitochondrion, nucleus	21.24	61.32
EES06935	Sorghum	cytosol, mitochondrion, nucleus	21.24	60.75
Zm00001d025401_P001	Maize	nucleus	20.59	60.58
EES00725	Sorghum	nucleus	19.93	60.4
Zm00001d040787_P001	Maize	nucleus	19.93	59.8
Zm00001d040785_P001	Maize	nucleus	19.93	59.8
TraesCS3D01G517600.1	Wheat	nucleus	17.65	59.34
TraesCS3A01G509700.1	Wheat	nucleus	17.97	58.51
TraesCS3D01G517700.1	Wheat	nucleus	17.65	57.45
TraesCS3D01G517500.1	Wheat	nucleus	17.65	57.45
Os01t0959100-01	Rice	nucleus	17.32	55.21
TraesCS3A01G509400.1	Wheat	nucleus	17.32	54.64
TraesCS3B01G578800.1	Wheat	nucleus	17.32	54.64
TraesCS3D01G518000.1	Wheat	nucleus	16.99	53.61
TraesCS3B01G456200.1	Wheat	nucleus	17.32	53.0
TraesCS3D01G518100.1	Wheat	nucleus	16.67	51.0
TraesCS3A01G509500.1	Wheat	nucleus	17.65	49.09
TraesCS3A01G510700.1	Wheat	nucleus	17.65	49.09
TraesCS3A01G509200.1	Wheat	nucleus	17.65	49.09
TraesCSU01G240200.1	Wheat	nucleus	17.65	49.09
Os01t0959200-01	Rice	nucleus	16.99	44.83
KRH35137	Soybean	nucleus	31.05	44.6
HORVU3Hr1G112050.2	Barley	plastid	18.3	43.08
KRG91659	Soybean	nucleus	31.7	40.76
VIT_18s0072g00380.t01	Wine grape	plastid	27.78	40.67
HORVU3Hr1G112080.1	Barley	cytosol, nucleus	15.69	36.09
HORVU3Hr1G112060.2	Barley	cytosol	14.38	36.07

Protein Annotations

EMBL:AJ320154	EMBL:JX839758	EnsemblPlants:PGSC0003DMT400017057	EnsemblPlantsGene:PGSC0003DMG400006661	GO:GO:0006950	GO:GO:0008150
InterPro:ABA_WDS	PANTHER:PTHR33801	PANTHER:PTHR33801:SF15	PFAM:PF02496	PGSC:PGSC0003DMG400006661	ProteinID:AFX67040
ProteinID:AFX67040.1	ProteinID:CAC86102	ProteinID:CAC86102.2	SEG:seg	UniParc:UPI0002953B75	UniProt:M1A8I4
MapMan:35.2	:	:	:	:	:

Description

ASR4 [Source:PGSC_GENE;Acc:PGSC0003DMG400006661]

Coordinates

chr4:+:60205627..60207072

Molecular Weight (calculated)

33958.3 Da

IEP (calculated)

4.659

GRAVY (calculated)

-1.629

Length

306 amino acids

Sequence
(BLAST)

001: MAEEKKHHFG GLFHHHKNEE EDIPVEKTTY EETTYGESEK TSTYGEKTSY GDDTYGEKTT TFGDDNKYGE KTSYGKGDDN KYGEKTSYGD DTYGEKTTTF
101: GDDNKYGEKT SYGKGDDNKY GEKTSYGDDT YGEKTTTFGD DNKYGEKTSY GEGDDNKYGE KTSYGDSGYG EKPSYGGGDD NKYGEKTSYG NEEGGYGGGV
201: GETTNYEENE SETKTSEDYK EEKKHHKHLE EIGGLGAVAA GAFALHEKHK AEKDPENAHK HKIEEGIAAA AAIGAGGFAF HEHHEKKEAK EEEEEAEGKK
301: KHHFFN

Best Arabidopsis Sequence Match ( AT2G25970.1 )
(BLAST)

001: MADESQYSSD TYSNKRKYEE PTAPPPSTRR PTGFSSGPIP SASVDPTAPT GLPPSSYNSV PPPMDEIQIA KQKAQEIAAR LLNSADAKRP RVDNGASYDY
101: GDNKGFSSYP SEGKQMSGTV PSSIPVSYGS FQGTTKKIDI PNMRVGVIIG KGGETIKYLQ LQSGAKIQVT RDMDADPNCA TRTVDLTGTP DQISKAEQLI
201: TDVLQEAEAG NTAGSGGGGG RRMGGQAGAD QFVMKIPNNK VGLIIGKGGE TIKSMQAKTG ARIQVIPLHL PPGDPTPERT LQIDGITEQI EHAKQLVNEI
301: ISGENRMRNS AMGGGYPQQG GYQARPPSSW APPGGPPAQP GYGGYMQPGA YPGPPQYGQS PYGSYPQQTS AGYYDQSSVP PSQQSAQGEY DYYGQQQSQQ
401: PSSGGSSAPP TDTTGYNYYQ HASGYGQAGQ GYQQDGYGAY NASQQSGYGQ AAGYDQQGGY GSTTNPSQEE DASQAAPPSS AQSGQAGYGT TGQQPPAQGS
501: TGQAGYGAPP TSQAGYSSQP AAAYNSGYGA PPPASKPPTY GQSQQSPGAP GSYGSQSGYA QPAASGYGQP PAYGYGQAPQ GYGSYGGYTQ PAAGGGYSSD
601: GSAGATAGGG GGTPASQSAA PPAGPPKASP KS

Arabidopsis Description

F17H15.1/F17H15.1 [Source:UniProtKB/TrEMBL;Acc:O82762]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.