Factsheet for PGSC0003DMT400017059

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071610.2.1	Tomato	extracellular	96.33	95.45
PGSC0003DMT400061912	Potato	cytosol, mitochondrion, nucleus	74.31	75.0
EES12153	Sorghum	nucleus	65.14	70.3
KRH08687	Soybean	cytosol, mitochondrion, nucleus	70.64	69.37
PGSC0003DMT400017061	Potato	cytosol, mitochondrion, nucleus	70.64	69.37
Zm00001d025401_P001	Maize	nucleus	61.47	64.42
TraesCS3D01G517600.1	Wheat	nucleus	53.21	63.74
EES00725	Sorghum	nucleus	58.72	63.37
GSMUA_Achr6P25740_001	Banana	cytosol, mitochondrion, nucleus	59.63	63.11
TraesCS3D01G517500.1	Wheat	nucleus	54.13	62.77
Zm00001d040787_P001	Maize	nucleus	58.72	62.75
Zm00001d040785_P001	Maize	nucleus	58.72	62.75
TraesCS3A01G509700.1	Wheat	nucleus	53.21	61.7
EES06935	Sorghum	cytosol, mitochondrion, nucleus	60.55	61.68
Zm00001d016760_P001	Maize	cytosol, mitochondrion, nucleus	59.63	61.32
TraesCS3B01G578800.1	Wheat	nucleus	54.13	60.82
TraesCS3D01G517700.1	Wheat	nucleus	52.29	60.64
TraesCS3A01G509400.1	Wheat	nucleus	53.21	59.79
Os01t0959100-01	Rice	nucleus	52.29	59.38
TraesCS3D01G518000.1	Wheat	nucleus	52.29	58.76
TraesCS3B01G456200.1	Wheat	nucleus	52.29	57.0
Os01t0959200-01	Rice	nucleus	57.8	54.31
TraesCS3D01G518100.1	Wheat	nucleus	49.54	54.0
TraesCS3A01G509200.1	Wheat	nucleus	52.29	51.82
TraesCS3A01G509500.1	Wheat	nucleus	52.29	51.82
TraesCS3A01G510700.1	Wheat	nucleus	52.29	51.82
TraesCSU01G240200.1	Wheat	nucleus	52.29	51.82
HORVU3Hr1G112050.2	Barley	plastid	52.29	43.85
HORVU3Hr1G112060.2	Barley	cytosol	46.79	41.8
HORVU3Hr1G112080.1	Barley	cytosol, nucleus	49.54	40.6
VIT_18s0072g00380.t01	Wine grape	plastid	70.64	36.84
KRH35137	Soybean	nucleus	66.97	34.27
KRG91659	Soybean	nucleus	65.14	29.83
PGSC0003DMT400017057	Potato	extracellular, nucleus	66.06	23.53

Protein Annotations

EMBL:DQ252504	EMBL:U76610	EnsemblPlants:PGSC0003DMT400017059	EnsemblPlantsGene:PGSC0003DMG400006662	GO:GO:0006950	GO:GO:0008150
InterPro:ABA_WDS	PANTHER:PTHR33801	PANTHER:PTHR33801:SF7	PFAM:PF02496	PGSC:PGSC0003DMG400006662	ProteinID:AAD00254
ProteinID:AAD00254.1	ProteinID:ABB55381	ProteinID:ABB55381.1	SEG:seg	UniParc:UPI000295ADE1	UniProt:M1A8I6
MapMan:35.2	:	:	:	:	:

Description

Ci21A protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006662]

Coordinates

chr4:+:60197696..60199823

Molecular Weight (calculated)

12371.4 Da

IEP (calculated)

7.100

GRAVY (calculated)

-1.294

Length

109 amino acids

Sequence
(BLAST)

001: MEEEKHHHHL FHHKDKAEEG PVDYEKETKH HKHLEQIGKL GTVAAGAYAL HEKHEAKKDP EHAHKHKIEE EIAAAAAVGA GGFALHEHHE KKDAKKEQKK
101: AEGGHHHLF

Best Arabidopsis Sequence Match ( AT3G48070.2 )
(BLAST)

001: MISDSITNAS ATSAPTARDF GKKKRTNRSA KLKQSKLGLR REQWLSQVAM INKGDKEEME SNRRIGSEKP DQRDLPRPVE NLDEDNNGTH RHESFIESLS
101: NSPNSILSGM NSIPNFSSSS SSGSGGSCSG NITEEEDADD DGCLDDWEAI ADALAADDEK HEKENPPESC QEHEDIKQSA LIGGADVVLR DAKADSQRRK
201: QKSNQAWRPD DKLRPQGLPN LEKQRSFPVM NLHFSSVTVV PSSCPICYED LDLTDSNFLP CPCGFRLCLF CHKTICDGDG RCPGCRKPYE RNTIKFEASV
301: QGGGLTIRLA RSSSMFCRVV CEYIRWYTNF KYIKVAISLF LIACENLAYL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JCT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.