Factsheet for Solyc04g076200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033576	Potato	cytosol	82.24	72.67
VIT_18s0001g07360.t01	Wine grape	cytosol	77.63	70.24
Os02t0760500-01	Rice	cytosol	69.08	64.81
EES07563	Sorghum	cytosol	66.45	62.35
CDY31068	Canola	cytosol	69.74	61.99
Zm00001d018135_P002	Maize	extracellular	65.79	61.73
TraesCS6D01G293300.1	Wheat	cytosol	65.79	61.73
TraesCS6B01G344000.1	Wheat	cytosol	65.79	61.73
AT1G09740.1	Thale cress	cytosol	69.08	61.4
CDY20676	Canola	cytosol	68.42	60.82
KRH16835	Soybean	cytosol, plastid	71.05	60.34
Bra030795.1-P	Field mustard	cytosol	55.92	59.86
GSMUA_Achr6P02230_001	Banana	cytosol	68.42	59.77
TraesCS6A01G314000.1	Wheat	cytosol	61.18	57.41
Bra019995.1-P	Field mustard	cytosol	63.16	56.14
CDX93484	Canola	cytosol	63.16	56.14
CDX94953	Canola	cytosol	63.16	55.81
KRH72447	Soybean	cytosol	53.95	47.95
Solyc12g099520.1.1	Tomato	cytosol	38.82	36.88
Solyc06g009050.2.1	Tomato	cytosol, nucleus	38.16	36.02
Solyc01g057000.2.1	Tomato	cytosol	38.16	33.72
Solyc01g066810.2.1	Tomato	cytosol	34.87	33.54
Solyc06g084540.2.1	Tomato	cytosol	34.21	33.12
Solyc05g054270.2.1	Tomato	cytosol	32.89	31.65
Solyc01g100370.2.1	Tomato	cytosol	34.21	31.33
Solyc12g062860.1.1	Tomato	cytosol, extracellular	29.61	25.71

Protein Annotations

EnsemblPlants:Solyc04g076200.2.1	EnsemblPlantsGene:Solyc04g076200.2	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729
InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF2	PFAM:PF00582
PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI0002765A72	UniProt:K4BU58	MapMan:35.2	:

Description

No Description!

Coordinates

chr4:-:61131296..61135191

Molecular Weight (calculated)

16218.7 Da

IEP (calculated)

7.027

GRAVY (calculated)

0.039

Length

152 amino acids

Sequence
(BLAST)

001: MNALNWTLDN IKLKPHDPDS PESQGFIVIL HVQSPPSIAA GLNPGAIPFG GPSDVEVPAF TAAIEAHQKR ITQAILDHAL GICAKKNANV KTQVVIGDPK
101: EKICDAVEEM NADLLVMGSR AFGPIKRMFL GSVSNYCTNH AQCPVIIVKA TP

Best Arabidopsis Sequence Match ( AT1G09740.1 )
(BLAST)

001: MDVSGSLNCV VVAVDGSEVS MEALRWALDN LKLSSSSSDS SFVVLHVQPS PSVAAGVSPG TIPFGGPSGL EVPAFTAAIE QHQKRITDTI LEHASQICAE
101: KSVNVKTQVV IGDPKYKICE AVENLHADLL VMGSRAYGRI KRMFLGSVSN YCTNHAHCPV VIIKPKEDSS A

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84TF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.