Factsheet for Solyc08g081920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032067	Potato	cytosol, mitochondrion	88.34	96.81
VIT_02s0025g01010.t01	Wine grape	mitochondrion	72.01	72.43
GSMUA_Achr4P00940_001	Banana	mitochondrion	67.06	68.25
KRH27862	Soybean	mitochondrion	67.06	67.06
TraesCS7D01G286500.1	Wheat	mitochondrion	65.01	64.64
TraesCS7A01G293200.1	Wheat	mitochondrion	65.01	64.64
Os08t0386700-01	Rice	mitochondrion	64.43	64.43
HORVU7Hr1G063510.5	Barley	mitochondrion	64.72	64.16
EES13774	Sorghum	mitochondrion	64.43	63.87
TraesCS7B01G185900.1	Wheat	mitochondrion	64.14	63.77
Zm00001d050251_P002	Maize	mitochondrion	61.22	51.72
Zm00001d032267_P003	Maize	mitochondrion	57.73	48.77
Solyc08g029170.2.1	Tomato	plastid	44.9	43.38
Solyc08g083340.1.1	Tomato	cytosol	14.58	40.32
Solyc12g096440.1.1	Tomato	cytosol	27.7	36.4
Solyc07g052320.2.1	Tomato	mitochondrion, plastid	42.57	35.78
Solyc11g013490.1.1	Tomato	golgi	41.11	35.61
Solyc12g005880.1.1	Tomato	plastid	40.52	35.19
Solyc11g042810.1.1	Tomato	golgi	40.23	35.03
Solyc07g064670.2.1	Tomato	nucleus	40.82	34.31
Solyc08g069060.2.1	Tomato	nucleus	39.36	34.09
Solyc10g007200.2.1	Tomato	golgi, mitochondrion	25.66	25.29
Solyc07g062590.2.1	Tomato	plastid	24.78	24.22

Protein Annotations

MapMan:18.1.2.1.2	EMBL:AJ457975	ncoils:Coil	InterPro:DUF4094	GO:GO:0000139	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008378
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
GO:GO:0019538	InterPro:Glyco_trans_31	PFAM:PF01762	PFAM:PF13334	PANTHER:PTHR11214	PANTHER:PTHR11214:SF224
UniProt:Q8RW34	EnsemblPlantsGene:Solyc08g081920.2	EnsemblPlants:Solyc08g081920.2.1	TMHMM:TMhelix	UniParc:UPI000009EA93	:

Description

Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q8RW34]

Coordinates

chr8:+:64830591..64837980

Molecular Weight (calculated)

38786.9 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.451

Length

343 amino acids

Sequence
(BLAST)

001: MNSRGSANRL SSTSNFRSRI SFLMLSMFST MAALYVAGRL WMDSENRVYL IQELDRRTGQ GRSAISVDDT LKIITCREQQ KRLTALQMEL GKASEEGFVS
101: KHLLDNNEKD SKKKLLAVIG VSTNFGNKKN RDAIRKAWMP TGPARKKLEE EKGIVIRFVI GRSLNRGDSS DRAIDDESRS FDDFIILNDH VESPQEQSKK
201: TKSFFAHAVE HWDAEFYAKV NDNVYVNLDA IGSVLTTYLD KPRAYIGCMK SGEVFSQPEQ KWYEPEWWKF GDGKSYFRHA SGEIFAVSKA LAQFISINRS
301: MLRSYAHDDV SAGSWFIGLD VKYVDEGKFC CSSWSSGSVC AAA

Best Arabidopsis Sequence Match ( AT5G53340.1 )
(BLAST)

001: MARKGSSIRL SSSRISTLLL FMFATFASFY VAGRLWQESQ TRVHLINELD RVTGQGKSAI SVDDTLKIIA CREQKKTLAA LEMELSSARQ EGFVSKSPKL
101: ADGTETKKRP LVVIGIMTSL GNKKKRDAVR QAWMGTGASL KKLESEKGVI ARFVIGRSAN KGDSMDKSID TENSQTDDFI ILDDVVEAPE EASKKVKLFF
201: AYAADRWDAQ FYAKAIDNIY VNIDALGTTL AAHLENPRAY IGCMKSGEVF SEPNHKWYEP EWWKFGDKKA YFRHAYGEMY VITHALARFV SINRDILHSY
301: AHDDVSTGSW FVGLDVKHVD EGKFCCSAWS SEAICAGV

Arabidopsis Description

HPTG1Hydroxyproline O-galactosyltransferase HPGT1 [Source:UniProtKB/Swiss-Prot;Acc:Q94F27]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.