Factsheet for Solyc07g064670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26940.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057471	Potato	golgi	99.02	99.02
VIT_19s0090g00560.t01	Wine grape	cytosol, golgi	82.35	82.96
Solyc07g052320.2.1	Tomato	mitochondrion, plastid	75.49	75.49
GSMUA_Achr4P33450_001	Banana	golgi	74.51	75.43
Solyc12g005880.1.1	Tomato	plastid	72.3	74.68
GSMUA_Achr4P23710_001	Banana	golgi	75.49	74.58
CDX97371	Canola	cytosol, endoplasmic reticulum	74.02	74.57
Bra010422.1-P	Field mustard	cytosol, golgi	73.53	73.89
CDY14294	Canola	cytosol, golgi	73.53	73.89
AT4G26940.1	Thale cress	endoplasmic reticulum, golgi	73.53	73.71
GSMUA_Achr7P00260_001	Banana	golgi	73.04	73.4
CDX92791	Canola	cytosol	72.06	73.13
CDY46675	Canola	cytosol	72.79	72.44
TraesCS7B01G241500.2	Wheat	cytosol, golgi, mitochondrion, nucleus	70.59	72.0
EER91307	Sorghum	golgi, peroxisome, plasma membrane	72.06	71.88
Bra019081.1-P	Field mustard	cytosol	67.89	71.76
TraesCS7A01G330900.1	Wheat	cytosol, golgi, mitochondrion, plastid	70.34	71.75
HORVU7Hr1G081720.2	Barley	cytosol	70.1	71.68
TraesCS7D01G339200.1	Wheat	cytosol, golgi, mitochondrion, plastid	70.1	71.5
Os03t0577500-01	Rice	golgi, peroxisome, plastid	70.59	70.94
Zm00001d013804_P003	Maize	golgi, plastid, vacuole	71.57	70.19
CDY11037	Canola	golgi, mitochondrion, plastid	58.58	66.57
CDY68943	Canola	golgi	56.62	65.44
Solyc11g013490.1.1	Tomato	golgi	63.48	65.4
Solyc08g083340.1.1	Tomato	cytosol	19.61	64.52
Solyc12g096440.1.1	Tomato	cytosol	38.97	60.92
Solyc11g042810.1.1	Tomato	golgi	58.09	60.15
Solyc08g069060.2.1	Tomato	nucleus	57.84	59.6
Solyc08g081920.2.1	Tomato	nucleus	34.31	40.82
Solyc08g029170.2.1	Tomato	plastid	29.9	34.37
Solyc10g007200.2.1	Tomato	golgi, mitochondrion	25.25	29.6
Solyc07g062590.2.1	Tomato	plastid	25.25	29.34

Protein Annotations

MapMan:21.4.1.1.5.3	Gene3D:3.90.550.50	ncoils:Coil	InterPro:DUF4094	GO:GO:0000139	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008378
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
GO:GO:0019538	InterPro:Glyco_trans_31	UniProt:K4CHE6	PFAM:PF01762	PFAM:PF13334	PANTHER:PTHR11214
PANTHER:PTHR11214:SF5	EnsemblPlantsGene:Solyc07g064670.2	EnsemblPlants:Solyc07g064670.2.1	TMHMM:TMhelix	UniParc:UPI000276C625	:

Description

Probable beta-1,3-galactosyltransferase 4 [Source:Projected from Arabidopsis thaliana (AT4G26940) UniProtKB/Swiss-Prot;Acc:Q8LEJ9]

Coordinates

chr7:+:66714807..66719518

Molecular Weight (calculated)

45672.6 Da

IEP (calculated)

8.036

GRAVY (calculated)

-0.407

Length

408 amino acids

Sequence
(BLAST)

001: MKNTMKSRGG GESAGKGVFS RKLTVLLCIG CFCVGMLFTD RMWTVPEAKG ITRTTQIDDQ KLGVVSEDCD PTNKDVKSES KDNFGEVTKT HHAIQTLDKT
101: ISNLEMELAA ARALQDSILS GSPITEDIKI PELAKKRKYR MVIGINTAFN SRKRRDSVRA TWMPQGDKRK KLEEEKGIVI RFVIGHSATS GGILDRAIEA
201: EDKKHGDFLR LEHVEGYLEL SAKTKTYFTT AVALWDADFY IKVDDDVHVN IGALGATLAR HHSKPRVYIG CMKSGPVLAQ KGVRYHEPEH WKFGEDGNKY
301: FRHATGQLYA ISKDLATYIS LNQHVLHKYV NEDVSLGSWL IGLDVEHIDD RRLCCGTPPD CEWKAQAGNI CVASFDWSCS GICRSVDRIM EVHRRCGEGE
401: NALWNASF

Best Arabidopsis Sequence Match ( AT1G05170.2 )
(BLAST)

001: MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL VSEGCNPKAL YQKEVKRDPQ ALFGEVANTH IALQTLDKTI
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF

Arabidopsis Description

B3GALT2Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3U9]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.