Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- golgi 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26940.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G26940.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G26940.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G339200.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 98.0 | 98.0 |
| TraesCS7A01G330900.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 97.25 | 97.25 |
| HORVU7Hr1G081720.2 | Barley | cytosol | 96.75 | 96.99 |
| Os03t0577500-01 | Rice | golgi, peroxisome, plastid | 83.5 | 82.27 |
| EER91307 | Sorghum | golgi, peroxisome, plasma membrane | 82.75 | 80.93 |
| Zm00001d013804_P003 | Maize | golgi, plastid, vacuole | 80.75 | 77.64 |
| GSMUA_Achr4P33450_001 | Banana | golgi | 73.25 | 72.7 |
| VIT_19s0090g00560.t01 | Wine grape | cytosol, golgi | 73.25 | 72.35 |
| VIT_12s0059g00640.t01 | Wine grape | golgi | 73.25 | 71.99 |
| GSMUA_Achr4P23710_001 | Banana | golgi | 73.75 | 71.43 |
| GSMUA_Achr7P00260_001 | Banana | golgi | 71.75 | 70.69 |
| Solyc07g064670.2.1 | Tomato | nucleus | 72.0 | 70.59 |
| PGSC0003DMT400057471 | Potato | golgi | 72.0 | 70.59 |
| PGSC0003DMT400074517 | Potato | cytosol, golgi, mitochondrion, vacuole | 71.75 | 70.34 |
| Solyc07g052320.2.1 | Tomato | mitochondrion, plastid | 71.5 | 70.1 |
| AT1G05170.2 | Thale cress | cytosol, golgi | 71.25 | 70.02 |
| KRH26781 | Soybean | golgi, plasma membrane | 71.25 | 70.02 |
| CDY46836 | Canola | plastid | 71.25 | 70.02 |
| KRH22570 | Soybean | golgi | 71.0 | 69.78 |
| CDY49507 | Canola | plastid | 71.5 | 69.76 |
| KRH56140 | Soybean | golgi, mitochondrion | 70.75 | 69.53 |
| KRH25371 | Soybean | golgi, mitochondrion | 70.25 | 69.21 |
| Solyc12g005880.1.1 | Tomato | plastid | 68.25 | 69.11 |
| PGSC0003DMT400022537 | Potato | plastid | 68.5 | 69.02 |
| CDY48266 | Canola | golgi | 70.5 | 68.95 |
| Bra005595.1-P | Field mustard | golgi | 70.5 | 68.95 |
| CDY12206 | Canola | golgi | 70.25 | 68.7 |
| PGSC0003DMT400071658 | Potato | golgi | 66.75 | 68.46 |
| AT2G32430.1 | Thale cress | golgi | 70.0 | 68.46 |
| CDX97371 | Canola | cytosol, endoplasmic reticulum | 67.5 | 66.67 |
| AT4G26940.1 | Thale cress | endoplasmic reticulum, golgi | 67.25 | 66.09 |
| CDY14294 | Canola | cytosol, golgi | 67.0 | 66.01 |
| Bra010422.1-P | Field mustard | cytosol, golgi | 67.0 | 66.01 |
| CDX92791 | Canola | cytosol | 66.25 | 65.92 |
| CDY46675 | Canola | cytosol | 66.5 | 64.88 |
| Bra015395.1-P | Field mustard | plastid | 69.0 | 64.79 |
| TraesCS6B01G166400.1 | Wheat | golgi | 64.25 | 64.25 |
| Bra019081.1-P | Field mustard | cytosol | 60.75 | 62.95 |
| TraesCS7B01G358000.2 | Wheat | golgi | 63.75 | 62.35 |
| CDY68943 | Canola | golgi | 53.25 | 60.34 |
| TraesCS6B01G227300.1 | Wheat | golgi | 59.75 | 60.2 |
| CDY11037 | Canola | golgi, mitochondrion, plastid | 53.0 | 59.05 |
| TraesCS5B01G233700.1 | Wheat | golgi | 55.75 | 56.46 |
| TraesCS1B01G278100.1 | Wheat | golgi | 56.5 | 56.36 |
| TraesCS3B01G419800.1 | Wheat | golgi | 53.5 | 52.71 |
| TraesCS7B01G217700.1 | Wheat | extracellular, golgi, peroxisome | 47.5 | 46.57 |
| TraesCS7B01G185900.1 | Wheat | mitochondrion | 33.75 | 39.13 |
| TraesCS7B01G041500.1 | Wheat | cytosol, golgi, mitochondrion, peroxisome, plastid | 30.0 | 33.52 |
| TraesCS7B01G013300.1 | Wheat | plastid | 25.25 | 27.3 |
| TraesCS1B01G144600.1 | Wheat | cytosol, golgi, peroxisome | 25.5 | 27.13 |
Protein Annotations
| MapMan:21.4.1.1.5.3 | Gene3D:3.90.550.50 | ncoils:Coil | InterPro:DUF4094 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008378 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 |
| InterPro:Glyco_trans_31 | PFAM:PF01762 | PFAM:PF13334 | PANTHER:PTHR11214 | PANTHER:PTHR11214:SF5 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS7B01G241500 | EnsemblPlants:TraesCS7B01G241500.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7B:-:449509827..449513315
Molecular Weight (calculated)
44798.1 Da
IEP (calculated)
7.708
GRAVY (calculated)
-0.415
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRGSGAGDE LLFRGTISRK WTSLLCLSSF CVGLIFTNRM WTVPESKEII RRSALELDKM NLVSSSDCAL KSINNEPKDD FGQVQRTEDA IQSLDKTISN
101: LEMELASAKA TQDSILNGGA PSSEPAAKRK YFMVIGINTA FSSRKRRDSV RATWMPQGEK RRKMEEEKGI IVRFVIGHSA TSGGILDRAI DAEDREHGDF
201: LRLDHVEGYL ELAAKTKSYF AKAVSMWDAE YFVKVDDDVH VNIATLGGIL ARHRSKPRAY IGCMKSGPVL AQEGVKYHEP EYWKFGEWGN KYFRHASGQL
301: YAISKDLASY ISINQHVLHK YANEDVSIGA WFIGVDAEHV DDRRLCCGTH PECERKAQAG NVCAASFDWS CSGICKSADR IKEVHRRCGE SENAIWNATF
101: LEMELASAKA TQDSILNGGA PSSEPAAKRK YFMVIGINTA FSSRKRRDSV RATWMPQGEK RRKMEEEKGI IVRFVIGHSA TSGGILDRAI DAEDREHGDF
201: LRLDHVEGYL ELAAKTKSYF AKAVSMWDAE YFVKVDDDVH VNIATLGGIL ARHRSKPRAY IGCMKSGPVL AQEGVKYHEP EYWKFGEWGN KYFRHASGQL
301: YAISKDLASY ISINQHVLHK YANEDVSIGA WFIGVDAEHV DDRRLCCGTH PECERKAQAG NVCAASFDWS CSGICKSADR IKEVHRRCGE SENAIWNATF
001: MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL VSEGCNPKAL YQKEVKRDPQ ALFGEVANTH IALQTLDKTI
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF
Arabidopsis Description
B3GALT2Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3U9]
SUBAcon: [golgi,cytosol]
SUBAcon: [golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.