Factsheet for GSMUA_Achr4P23710_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
mitochondrion 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26940.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P33450_001	Banana	golgi	87.89	90.07
GSMUA_Achr7P00260_001	Banana	golgi	87.41	88.92
VIT_19s0090g00560.t01	Wine grape	cytosol, golgi	79.18	80.74
VIT_12s0059g00640.t01	Wine grape	golgi	77.0	78.13
KRH22570	Soybean	golgi	75.54	76.66
KRH26781	Soybean	golgi, plasma membrane	75.54	76.66
Os03t0577500-01	Rice	golgi, peroxisome, plastid	74.82	76.11
EER91307	Sorghum	golgi, peroxisome, plasma membrane	75.3	76.04
KRH56140	Soybean	golgi, mitochondrion	74.82	75.92
PGSC0003DMT400057471	Potato	golgi	74.82	75.74
Solyc07g064670.2.1	Tomato	nucleus	74.58	75.49
KRH25371	Soybean	golgi, mitochondrion	74.09	75.37
PGSC0003DMT400071658	Potato	golgi	70.94	75.13
HORVU7Hr1G081720.2	Barley	cytosol	71.43	73.93
TraesCS7B01G241500.2	Wheat	cytosol, golgi, mitochondrion, nucleus	71.43	73.75
TraesCS7D01G339200.1	Wheat	cytosol, golgi, mitochondrion, plastid	71.19	73.5
TraesCS7A01G330900.1	Wheat	cytosol, golgi, mitochondrion, plastid	70.94	73.25
CDY46836	Canola	plastid	71.67	72.73
AT1G05170.2	Thale cress	cytosol, golgi	71.67	72.73
Zm00001d013804_P003	Maize	golgi, plastid, vacuole	73.12	72.6
CDX97371	Canola	cytosol, endoplasmic reticulum	71.19	72.59
CDY49507	Canola	plastid	71.91	72.44
Bra010422.1-P	Field mustard	cytosol, golgi	70.94	72.17
CDY14294	Canola	cytosol, golgi	70.94	72.17
Solyc12g005880.1.1	Tomato	plastid	69.01	72.15
PGSC0003DMT400022537	Potato	plastid	69.25	72.04
Bra005595.1-P	Field mustard	golgi	71.19	71.88
CDY48266	Canola	golgi	71.19	71.88
PGSC0003DMT400074517	Potato	cytosol, golgi, mitochondrion, vacuole	70.94	71.81
GSMUA_Achr5P00690_001	Banana	golgi	69.49	71.57
Solyc07g052320.2.1	Tomato	mitochondrion, plastid	70.7	71.57
AT4G26940.1	Thale cress	endoplasmic reticulum, golgi	70.46	71.5
AT2G32430.1	Thale cress	golgi	70.22	70.9
CDY12206	Canola	golgi	70.22	70.9
CDX92791	Canola	cytosol	68.77	70.65
CDY46675	Canola	cytosol	69.98	70.49
Bra019081.1-P	Field mustard	cytosol	64.65	69.17
Bra015395.1-P	Field mustard	plastid	70.46	68.31
GSMUA_Achr9P30290_001	Banana	cytosol	69.25	67.77
GSMUA_Achr5P23050_001	Banana	cytosol, golgi, mitochondrion, plastid	60.77	62.75
CDY68943	Canola	golgi	53.51	62.61
CDY11037	Canola	golgi, mitochondrion, plastid	54.24	62.4
GSMUA_Achr8P23200_001	Banana	golgi	60.05	58.08
GSMUA_Achr8P08420_001	Banana	cytosol	54.72	57.22
GSMUA_Achr11P...	Banana	golgi	54.0	53.86
GSMUA_Achr4P00940_001	Banana	mitochondrion	34.14	41.84
GSMUA_Achr8P24200_001	Banana	cytosol	30.51	35.0
GSMUA_Achr7P14080_001	Banana	golgi, plastid	26.39	31.69
GSMUA_Achr10P...	Banana	mitochondrion	21.79	29.22
GSMUA_Achr6P05430_001	Banana	endoplasmic reticulum, nucleus, plastid	25.42	27.93

Protein Annotations

MapMan:21.4.1.1.5.3	Gene3D:3.90.550.50	ncoils:Coil	InterPro:DUF4094	GO:GO:0000139	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008378
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G23710_001	EnsemblPlants:GSMUA_Achr4P23710_001	EnsemblPlants:GSMUA_Achr4T23710_001	InterPro:Glyco_trans_31	UniProt:M0SRI2
PFAM:PF01762	PFAM:PF13334	PANTHER:PTHR11214	PANTHER:PTHR11214:SF5	TMHMM:TMhelix	UniParc:UPI0002960086
SEG:seg	:	:	:	:	:

Description

Probable beta-1,3-galactosyltransferase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G23710_001]

Coordinates

chr4:+:23715344..23720577

Molecular Weight (calculated)

45715.7 Da

IEP (calculated)

8.591

GRAVY (calculated)

-0.338

Length

413 amino acids

Sequence
(BLAST)

001: MSFKRGGGGR GGGGGGGELS ARGMVSMTWT FLLCLGSFCA GLLFINSWTM PEAKDIIRTT GTEDNKLNLV ANDCNSRTID KKQEAKDILG KVSNTQQVIQ
101: TLDKTIANLE MELAAARATQ ESIVNGAPLS ETLKATESRA RRKYLMVIGI NTAFSSRRRR DSVRATWMPQ GEKRKKLEEE KGIIVRFVIG HSATSGGILD
201: KAIEAEHAKN GDLMRLDHVE GYLELSAKTK IYFATAVSMW DADFYIKVDD DVHVNIATLG ATLAKHRSKP RVYIGCMKSG PVLAQKGVRY HEPEYWKFGE
301: EGNKYFRHAT GQLYAISKDL ATYISMNQHV LHKYANEDVS LGSWFIGLDV EHIDDRRLCC GTPPDCEWKA QAGNICVASF DWSCSGICNS AERIKEVHRR
401: CGEGKNALLN AVF

Best Arabidopsis Sequence Match ( AT1G05170.2 )
(BLAST)

001: MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL VSEGCNPKAL YQKEVKRDPQ ALFGEVANTH IALQTLDKTI
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF

Arabidopsis Description

B3GALT2Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3U9]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.