Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26940.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G26940.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G26940.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G339200.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 97.25 | 97.25 |
| TraesCS7B01G241500.2 | Wheat | cytosol, golgi, mitochondrion, nucleus | 97.25 | 97.25 |
| HORVU7Hr1G081720.2 | Barley | cytosol | 96.25 | 96.49 |
| Os03t0577500-01 | Rice | golgi, peroxisome, plastid | 83.25 | 82.02 |
| EER91307 | Sorghum | golgi, peroxisome, plasma membrane | 82.5 | 80.68 |
| Zm00001d013804_P003 | Maize | golgi, plastid, vacuole | 81.0 | 77.88 |
| GSMUA_Achr4P33450_001 | Banana | golgi | 73.25 | 72.7 |
| VIT_12s0059g00640.t01 | Wine grape | golgi | 73.25 | 71.99 |
| VIT_19s0090g00560.t01 | Wine grape | cytosol, golgi | 72.5 | 71.6 |
| GSMUA_Achr4P23710_001 | Banana | golgi | 73.25 | 70.94 |
| GSMUA_Achr7P00260_001 | Banana | golgi | 71.75 | 70.69 |
| Solyc07g064670.2.1 | Tomato | nucleus | 71.75 | 70.34 |
| PGSC0003DMT400057471 | Potato | golgi | 71.75 | 70.34 |
| CDY46836 | Canola | plastid | 71.5 | 70.27 |
| KRH26781 | Soybean | golgi, plasma membrane | 71.0 | 69.78 |
| PGSC0003DMT400074517 | Potato | cytosol, golgi, mitochondrion, vacuole | 71.0 | 69.61 |
| KRH22570 | Soybean | golgi | 70.75 | 69.53 |
| CDY49507 | Canola | plastid | 71.25 | 69.51 |
| Solyc07g052320.2.1 | Tomato | mitochondrion, plastid | 70.75 | 69.36 |
| AT1G05170.2 | Thale cress | cytosol, golgi | 70.5 | 69.29 |
| KRH56140 | Soybean | golgi, mitochondrion | 70.25 | 69.04 |
| KRH25371 | Soybean | golgi, mitochondrion | 70.0 | 68.97 |
| Solyc12g005880.1.1 | Tomato | plastid | 68.0 | 68.86 |
| PGSC0003DMT400022537 | Potato | plastid | 68.0 | 68.51 |
| CDY48266 | Canola | golgi | 69.75 | 68.22 |
| Bra005595.1-P | Field mustard | golgi | 69.75 | 68.22 |
| AT2G32430.1 | Thale cress | golgi | 69.5 | 67.97 |
| CDY12206 | Canola | golgi | 69.5 | 67.97 |
| PGSC0003DMT400071658 | Potato | golgi | 66.25 | 67.95 |
| CDX97371 | Canola | cytosol, endoplasmic reticulum | 67.5 | 66.67 |
| CDY14294 | Canola | cytosol, golgi | 67.25 | 66.26 |
| Bra010422.1-P | Field mustard | cytosol, golgi | 67.25 | 66.26 |
| CDX92791 | Canola | cytosol | 66.25 | 65.92 |
| AT4G26940.1 | Thale cress | endoplasmic reticulum, golgi | 66.75 | 65.6 |
| TraesCS6A01G138100.1 | Wheat | golgi | 65.0 | 65.0 |
| CDY46675 | Canola | cytosol | 66.5 | 64.88 |
| Bra015395.1-P | Field mustard | plastid | 69.0 | 64.79 |
| TraesCS7A01G458600.1 | Wheat | golgi | 64.25 | 63.77 |
| Bra019081.1-P | Field mustard | cytosol | 60.75 | 62.95 |
| TraesCS6A01G201400.2 | Wheat | golgi | 60.75 | 61.21 |
| CDY68943 | Canola | golgi | 53.0 | 60.06 |
| CDY11037 | Canola | golgi, mitochondrion, plastid | 53.5 | 59.61 |
| TraesCS1A01G267200.1 | Wheat | golgi | 56.25 | 56.11 |
| TraesCS5A01G235300.4 | Wheat | golgi | 56.0 | 52.71 |
| TraesCS3A01G389200.1 | Wheat | golgi, mitochondrion | 52.75 | 52.36 |
| TraesCS7A01G316500.2 | Wheat | golgi, mitochondrion, plastid | 48.0 | 46.94 |
| TraesCS7A01G293200.1 | Wheat | mitochondrion | 33.5 | 38.84 |
| TraesCS7A01G139800.1 | Wheat | cytosol, golgi, mitochondrion, peroxisome, plastid | 30.25 | 33.99 |
| TraesCS1A01G125600.1 | Wheat | cytosol, golgi, peroxisome | 25.75 | 27.39 |
| TraesCS7A01G115200.1 | Wheat | plastid | 24.75 | 27.27 |
Protein Annotations
| MapMan:21.4.1.1.5.3 | Gene3D:3.90.550.50 | ncoils:Coil | InterPro:DUF4094 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008378 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 |
| InterPro:Glyco_trans_31 | PFAM:PF01762 | PFAM:PF13334 | PANTHER:PTHR11214 | PANTHER:PTHR11214:SF5 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS7A01G330900 | EnsemblPlants:TraesCS7A01G330900.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7A:+:484079368..484082977
Molecular Weight (calculated)
44812.1 Da
IEP (calculated)
8.106
GRAVY (calculated)
-0.403
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRGSGGGDE LLFRGTISRK WTSLLCLSSF FVGLIFTNRM WTVPESKEII RRSALELDKM NLVSSSDCAL KSINNEPKDY VGQVQRTEDA IQTLDKTISN
101: LEMELASAKA TQDSILNGGV PSSEPAAKRK YFMVIGINTA FSSRKRRDSV RATWMPQGEK RRKMEEEKGI IIRFVIGHSA TSGGILDRAI DAEDREHGDF
201: LRLDHVEGYL ELAAKTKSYF AKAVSTWDAE YFVKVDDDVH VNIATLGGIL ARHRSKPRAY IGCMKSGPVL AQEGVKYHEP EYWKFGEWGN KYFRHASGQL
301: YAISKDLASY ISINQHVLHK YANEDVSIGA WFIGVDAEHV DDRRLCCGTH PDCERKAQAG NVCAASFDWS CSGICKSADR IKEVHRRCGE SANTIWNATF
101: LEMELASAKA TQDSILNGGV PSSEPAAKRK YFMVIGINTA FSSRKRRDSV RATWMPQGEK RRKMEEEKGI IIRFVIGHSA TSGGILDRAI DAEDREHGDF
201: LRLDHVEGYL ELAAKTKSYF AKAVSTWDAE YFVKVDDDVH VNIATLGGIL ARHRSKPRAY IGCMKSGPVL AQEGVKYHEP EYWKFGEWGN KYFRHASGQL
301: YAISKDLASY ISINQHVLHK YANEDVSIGA WFIGVDAEHV DDRRLCCGTH PDCERKAQAG NVCAASFDWS CSGICKSADR IKEVHRRCGE SANTIWNATF
001: MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL VSEGCNPKAL YQKEVKRDPQ ALFGEVANTH IALQTLDKTI
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF
Arabidopsis Description
B3GALT2Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3U9]
SUBAcon: [golgi,cytosol]
SUBAcon: [golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.