Factsheet for PGSC0003DMT400057471

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
mitochondrion 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26940.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064670.2.1	Tomato	nucleus	99.02	99.02
PGSC0003DMT400071658	Potato	golgi	80.39	84.1
VIT_19s0090g00560.t01	Wine grape	cytosol, golgi	82.35	82.96
GSMUA_Achr4P33450_001	Banana	golgi	74.75	75.68
PGSC0003DMT400074517	Potato	cytosol, golgi, mitochondrion, vacuole	75.49	75.49
GSMUA_Achr4P23710_001	Banana	golgi	75.74	74.82
CDX97371	Canola	cytosol, endoplasmic reticulum	74.02	74.57
PGSC0003DMT400022537	Potato	plastid	72.3	74.31
AT4G26940.1	Thale cress	endoplasmic reticulum, golgi	73.77	73.96
Bra010422.1-P	Field mustard	cytosol, golgi	73.53	73.89
CDY14294	Canola	cytosol, golgi	73.53	73.89
CDX92791	Canola	cytosol	72.55	73.63
GSMUA_Achr7P00260_001	Banana	golgi	73.04	73.4
CDY46675	Canola	cytosol	72.79	72.44
Bra019081.1-P	Field mustard	cytosol	68.14	72.02
TraesCS7B01G241500.2	Wheat	cytosol, golgi, mitochondrion, nucleus	70.59	72.0
EER91307	Sorghum	golgi, peroxisome, plasma membrane	72.06	71.88
TraesCS7A01G330900.1	Wheat	cytosol, golgi, mitochondrion, plastid	70.34	71.75
HORVU7Hr1G081720.2	Barley	cytosol	70.1	71.68
TraesCS7D01G339200.1	Wheat	cytosol, golgi, mitochondrion, plastid	70.1	71.5
Os03t0577500-01	Rice	golgi, peroxisome, plastid	70.83	71.18
Zm00001d013804_P003	Maize	golgi, plastid, vacuole	72.06	70.67
CDY11037	Canola	golgi, mitochondrion, plastid	58.58	66.57
CDY68943	Canola	golgi	56.62	65.44
PGSC0003DMT400071429	Potato	golgi	63.48	65.4
PGSC0003DMT400075526	Potato	cytosol	50.49	63.0
PGSC0003DMT400082760	Potato	golgi	58.82	60.3
PGSC0003DMT400075963	Potato	golgi	57.6	59.34
PGSC0003DMT400032067	Potato	cytosol, mitochondrion	34.07	44.41
PGSC0003DMT400023412	Potato	mitochondrion	34.56	40.17
PGSC0003DMT400051332	Potato	extracellular, plasma membrane, vacuole	17.65	31.86
PGSC0003DMT400032365	Potato	plastid	25.25	29.43
PGSC0003DMT400054913	Potato	golgi, mitochondrion	25.0	29.31
PGSC0003DMT400050795	Potato	vacuole	12.99	23.14

Protein Annotations

EntrezGene:102578966	MapMan:21.4.1.1.5.3	Gene3D:3.90.550.50	ncoils:Coil	InterPro:DUF4094	GO:GO:0000139
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152
GO:GO:0008378	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016757	GO:GO:0019538	InterPro:Glyco_trans_31	UniProt:M1C148	PFAM:PF01762	PFAM:PF13334
EnsemblPlantsGene:PGSC0003DMG403022314	PGSC:PGSC0003DMG403022314	EnsemblPlants:PGSC0003DMT400057471	PANTHER:PTHR11214	PANTHER:PTHR11214:SF5	TMHMM:TMhelix
UniParc:UPI000295E023	RefSeq:XP_006346208.1	:	:	:	:

Description

Isoform 2 of Probable beta-1,3-galactosyltransferase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG403022314]

Coordinates

chr7:+:54899960..54904617

Molecular Weight (calculated)

45669.6 Da

IEP (calculated)

8.174

GRAVY (calculated)

-0.396

Length

408 amino acids

Sequence
(BLAST)

001: MKSTMKSRGG GESAGKGVFS RKLTVLLCIG CFCVGMLFTD RMWTVPEAKG ITRTTQIDDQ KLGVVSEDCD PTNKDVKSES KDIFGEVTKT HHAIQTLDKT
101: ISNLEMELAA ARALQDSILS GSPITEDIKI PELAKKRKYR MVIGINTAFN SRKRRDSVRA TWMPQGDKRK KLEEEKGIVI RFVIGHSATS GGILDRAIEA
201: EDKKHGDFLR LEHVEGYLEL SAKTKTYFTT AVALWDADFY IKVDDDVHVN IGALGATLAR HHSKPRVYIG CMKSGPVLAQ KGVRYHEPEH WKFGEDGNRY
301: FRHATGQLYA ISKDLATYIS LNQHVLHKYV NEDVSLGSWL IGLDVEHIDD RRLCCGTPPD CEWKAQAGNI CVASFDWSCS GICRSVDRIK EVHRRCGEGE
401: NALWNASF

Best Arabidopsis Sequence Match ( AT1G05170.2 )
(BLAST)

001: MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL VSEGCNPKAL YQKEVKRDPQ ALFGEVANTH IALQTLDKTI
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF

Arabidopsis Description

B3GALT2Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3U9]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.