Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0050g02460.t01 | Wine grape | mitochondrion | 67.52 | 69.3 |
| GSMUA_Achr4P00940_001 | Banana | mitochondrion | 65.24 | 67.95 |
| KRH53422 | Soybean | mitochondrion | 66.38 | 67.93 |
| PGSC0003DMT400032067 | Potato | cytosol, mitochondrion | 60.11 | 67.41 |
| KRH64518 | Soybean | mitochondrion | 65.81 | 67.35 |
| Bra003064.1-P | Field mustard | mitochondrion | 61.54 | 64.86 |
| AT5G53340.1 | Thale cress | mitochondrion | 62.39 | 64.79 |
| CDY49171 | Canola | mitochondrion | 61.25 | 64.18 |
| Os08t0386700-01 | Rice | mitochondrion | 62.68 | 64.14 |
| CDX96213 | Canola | mitochondrion | 60.97 | 63.88 |
| EES13774 | Sorghum | mitochondrion | 62.96 | 63.87 |
| CDY14386 | Canola | mitochondrion | 61.54 | 63.72 |
| CDY35642 | Canola | mitochondrion | 61.25 | 63.61 |
| TraesCS7A01G293200.1 | Wheat | mitochondrion | 62.39 | 63.48 |
| TraesCS7D01G286500.1 | Wheat | mitochondrion | 62.39 | 63.48 |
| HORVU7Hr1G063510.5 | Barley | mitochondrion | 62.11 | 63.01 |
| TraesCS7B01G185900.1 | Wheat | mitochondrion | 61.54 | 62.61 |
| Bra022647.1-P | Field mustard | mitochondrion | 60.68 | 52.85 |
| Zm00001d050251_P002 | Maize | mitochondrion | 59.54 | 51.48 |
| Zm00001d032267_P003 | Maize | mitochondrion | 56.98 | 49.26 |
| PGSC0003DMT400071658 | Potato | golgi | 40.74 | 36.67 |
| PGSC0003DMT400075526 | Potato | cytosol | 33.62 | 36.09 |
| PGSC0003DMT400082760 | Potato | golgi | 39.6 | 34.92 |
| PGSC0003DMT400074517 | Potato | cytosol, golgi, mitochondrion, vacuole | 40.46 | 34.8 |
| PGSC0003DMT400057471 | Potato | golgi | 40.17 | 34.56 |
| PGSC0003DMT400071429 | Potato | golgi | 38.75 | 34.34 |
| PGSC0003DMT400022537 | Potato | plastid | 37.32 | 33.0 |
| PGSC0003DMT400075963 | Potato | golgi | 35.9 | 31.82 |
| PGSC0003DMT400054913 | Potato | golgi, mitochondrion | 22.79 | 22.99 |
| PGSC0003DMT400032365 | Potato | plastid | 22.22 | 22.29 |
| PGSC0003DMT400051332 | Potato | extracellular, plasma membrane, vacuole | 13.11 | 20.35 |
| PGSC0003DMT400050795 | Potato | vacuole | 10.26 | 15.72 |
Protein Annotations
| MapMan:18.1.2.1.2 | ncoils:Coil | InterPro:DUF4094 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 |
| GO:GO:0005802 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008378 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010405 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016757 | GO:GO:0018258 | GO:GO:0019538 | GO:GO:1990714 | InterPro:Glyco_trans_31 |
| UniProt:M1AIB1 | PFAM:PF01762 | PFAM:PF13334 | EnsemblPlantsGene:PGSC0003DMG400009066 | PGSC:PGSC0003DMG400009066 | EnsemblPlants:PGSC0003DMT400023412 |
| PANTHER:PTHR11214 | PANTHER:PTHR11214:SF224 | TMHMM:TMhelix | UniParc:UPI000294F8C5 | SEG:seg | : |
Description
Beta-1,3-galactosyltransferase sqv-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400009066]
Coordinates
chr3:-:49047229..49052561
Molecular Weight (calculated)
39601.0 Da
IEP (calculated)
9.020
GRAVY (calculated)
-0.333
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSRGSNARF SAMGMRSPIS SLMLAMFAAM ASLYVAGRLW QDAQNRVYFT KELDRITGQG HSAISVADTL KIIECREQRK KLSALEMELT AARQEGFISK
101: QSSDMSKTPE KGPVIVIGIF TSFGRKNDRD AIRKAWMSTA LKKMEEKKGI VARFVIGRSA NRGDSLDRSI DSENSQTNDF FILENHVEAP EELSKKTKLF
201: FAHAADSWTA DYYAKVNDNV FVNLDSLGNT LASYLSDPRV YIGCMKSGEV FSEQGHKWYE PDWWKFGDGK TYFRHASTEL FVISQALARY ISINRSLLRT
301: YAHDDVSVGS WFIGADVKHV DDRKFCCSSW SSGLFISLSL YQHNLLGQIN S
101: QSSDMSKTPE KGPVIVIGIF TSFGRKNDRD AIRKAWMSTA LKKMEEKKGI VARFVIGRSA NRGDSLDRSI DSENSQTNDF FILENHVEAP EELSKKTKLF
201: FAHAADSWTA DYYAKVNDNV FVNLDSLGNT LASYLSDPRV YIGCMKSGEV FSEQGHKWYE PDWWKFGDGK TYFRHASTEL FVISQALARY ISINRSLLRT
301: YAHDDVSVGS WFIGADVKHV DDRKFCCSSW SSGLFISLSL YQHNLLGQIN S
001: MARKGSSIRL SSSRISTLLL FMFATFASFY VAGRLWQESQ TRVHLINELD RVTGQGKSAI SVDDTLKIIA CREQKKTLAA LEMELSSARQ EGFVSKSPKL
101: ADGTETKKRP LVVIGIMTSL GNKKKRDAVR QAWMGTGASL KKLESEKGVI ARFVIGRSAN KGDSMDKSID TENSQTDDFI ILDDVVEAPE EASKKVKLFF
201: AYAADRWDAQ FYAKAIDNIY VNIDALGTTL AAHLENPRAY IGCMKSGEVF SEPNHKWYEP EWWKFGDKKA YFRHAYGEMY VITHALARFV SINRDILHSY
301: AHDDVSTGSW FVGLDVKHVD EGKFCCSAWS SAICAGV
101: ADGTETKKRP LVVIGIMTSL GNKKKRDAVR QAWMGTGASL KKLESEKGVI ARFVIGRSAN KGDSMDKSID TENSQTDDFI ILDDVVEAPE EASKKVKLFF
201: AYAADRWDAQ FYAKAIDNIY VNIDALGTTL AAHLENPRAY IGCMKSGEVF SEPNHKWYEP EWWKFGDKKA YFRHAYGEMY VITHALARFV SINRDILHSY
301: AHDDVSTGSW FVGLDVKHVD EGKFCCSAWS SAICAGV
Arabidopsis Description
HPTG1Hydroxyproline O-galactosyltransferase HPGT1 [Source:UniProtKB/Swiss-Prot;Acc:Q94F27]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.