Factsheet for PGSC0003DMT400071658

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 1
golgi 5
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26940.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057471	Potato	golgi	84.1	80.39
VIT_19s0090g00560.t01	Wine grape	cytosol, golgi	81.03	78.02
GSMUA_Achr4P33450_001	Banana	golgi	74.87	72.46
PGSC0003DMT400074517	Potato	cytosol, golgi, mitochondrion, vacuole	74.62	71.32
GSMUA_Achr4P23710_001	Banana	golgi	75.13	70.94
GSMUA_Achr7P00260_001	Banana	golgi	72.31	69.46
CDX97371	Canola	cytosol, endoplasmic reticulum	71.79	69.14
CDY14294	Canola	cytosol, golgi	71.28	68.47
Bra010422.1-P	Field mustard	cytosol, golgi	71.28	68.47
AT4G26940.1	Thale cress	endoplasmic reticulum, golgi	71.28	68.3
PGSC0003DMT400022537	Potato	plastid	69.23	68.01
Os03t0577500-01	Rice	golgi, peroxisome, plastid	70.51	67.73
CDX92791	Canola	cytosol	69.74	67.66
CDY46675	Canola	cytosol	71.03	67.56
HORVU7Hr1G081720.2	Barley	cytosol	68.46	66.92
TraesCS7B01G241500.2	Wheat	cytosol, golgi, mitochondrion, nucleus	68.46	66.75
EER91307	Sorghum	golgi, peroxisome, plasma membrane	69.74	66.5
TraesCS7D01G339200.1	Wheat	cytosol, golgi, mitochondrion, plastid	68.21	66.5
TraesCS7A01G330900.1	Wheat	cytosol, golgi, mitochondrion, plastid	67.95	66.25
Bra019081.1-P	Field mustard	cytosol	65.13	65.8
Zm00001d013804_P003	Maize	golgi, plastid, vacuole	69.74	65.38
PGSC0003DMT400075526	Potato	cytosol	53.85	64.22
PGSC0003DMT400071429	Potato	golgi	63.33	62.37
CDY11037	Canola	golgi, mitochondrion, plastid	56.41	61.28
CDY68943	Canola	golgi	55.38	61.19
PGSC0003DMT400082760	Potato	golgi	61.03	59.8
PGSC0003DMT400075963	Potato	golgi	58.72	57.83
PGSC0003DMT400032067	Potato	cytosol, mitochondrion	36.15	45.05
PGSC0003DMT400023412	Potato	mitochondrion	36.67	40.74
PGSC0003DMT400051332	Potato	extracellular, plasma membrane, vacuole	18.46	31.86
PGSC0003DMT400032365	Potato	plastid	27.44	30.57
PGSC0003DMT400054913	Potato	golgi, mitochondrion	26.67	29.89
PGSC0003DMT400050795	Potato	vacuole	14.36	24.45

Protein Annotations

MapMan:21.4.1.1.5.3	Gene3D:3.90.550.50	ncoils:Coil	InterPro:DUF4094	GO:GO:0000139	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008378
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
GO:GO:0019538	InterPro:Glyco_trans_31	UniProt:M1CP39	PFAM:PF01762	PFAM:PF13334	EnsemblPlantsGene:PGSC0003DMG400027874
PGSC:PGSC0003DMG400027874	EnsemblPlants:PGSC0003DMT400071658	PANTHER:PTHR11214	PANTHER:PTHR11214:SF5	TMHMM:TMhelix	UniParc:UPI0002961960
SEG:seg	:	:	:	:	:

Description

Isoform 2 of Probable beta-1,3-galactosyltransferase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400027874]

Coordinates

chr12:+:9122994..9127546

Molecular Weight (calculated)

43875.3 Da

IEP (calculated)

8.217

GRAVY (calculated)

-0.375

Length

390 amino acids

Sequence
(BLAST)

001: MSWKSKRGLK SVTSPNLTIL LCIGCFCAGM FFTHRVWTVP EAKGISRTTH IDDQKKDVRS ESKYIPGDAS RTNHAVQTLD TTISNLEMEL AAARALQDSI
101: TSSAPITEDL NISELTKKRK YLMVIGINTA FSSRKRRDSV RATWMPQGDK LKKLEEEKGI VMRFVIGHSA TSGGILDRAI EAEEKQHGDF LRLEHVEGYL
201: ELSAKTKSYF TTAISLWDAD FYVKVDDDVH VNIGTLAATL ATHRSKPRVY IGCMKSGPVL AQKGVRYHEP EHWKFGEDGN KYFRHATGQL YAISKDLATY
301: ISINRHILHK YANEDVTLGS WFIGLDVEHI DDRKMCCGTP PDCEWKAQTG NICVASFDWS CSGICKSVDR IKEVHRRCGE GENALWSTVF

Best Arabidopsis Sequence Match ( AT1G05170.2 )
(BLAST)

001: MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL VSEGCNPKAL YQKEVKRDPQ ALFGEVANTH IALQTLDKTI
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF

Arabidopsis Description

B3GALT2Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3U9]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.