Factsheet for Zm00001d013804_P003

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, vacuole

Predictor Summary:

golgi 1
mitochondrion 1
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, vacuole
Any Predictor:	golgi, mitochondrion, vacuole
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26940.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91307	Sorghum	golgi, peroxisome, plasma membrane	89.9	91.44
Os03t0577500-01	Rice	golgi, peroxisome, plastid	82.21	84.24
TraesCS7A01G330900.1	Wheat	cytosol, golgi, mitochondrion, plastid	77.88	81.0
HORVU7Hr1G081720.2	Barley	cytosol	77.64	80.95
TraesCS7B01G241500.2	Wheat	cytosol, golgi, mitochondrion, nucleus	77.64	80.75
TraesCS7D01G339200.1	Wheat	cytosol, golgi, mitochondrion, plastid	77.4	80.5
GSMUA_Achr7P00260_001	Banana	golgi	71.88	73.65
VIT_12s0059g00640.t01	Wine grape	golgi	71.88	73.46
GSMUA_Achr4P33450_001	Banana	golgi	71.15	73.45
GSMUA_Achr4P23710_001	Banana	golgi	72.6	73.12
VIT_19s0090g00560.t01	Wine grape	cytosol, golgi	70.43	72.35
KRH22570	Soybean	golgi	70.67	72.24
PGSC0003DMT400057471	Potato	golgi	70.67	72.06
KRH56140	Soybean	golgi, mitochondrion	70.19	71.74
KRH26781	Soybean	golgi, plasma membrane	70.19	71.74
Solyc07g064670.2.1	Tomato	nucleus	70.19	71.57
AT2G32430.1	Thale cress	golgi	70.19	71.39
KRH25371	Soybean	golgi, mitochondrion	69.23	70.94
CDY48266	Canola	golgi	69.23	70.42
Bra005595.1-P	Field mustard	golgi	69.23	70.42
PGSC0003DMT400074517	Potato	cytosol, golgi, mitochondrion, vacuole	68.99	70.34
CDY46836	Canola	plastid	68.75	70.27
AT1G05170.2	Thale cress	cytosol, golgi	68.75	70.27
CDY12206	Canola	golgi	68.99	70.17
Solyc07g052320.2.1	Tomato	mitochondrion, plastid	68.75	70.1
CDY49507	Canola	plastid	68.99	70.0
PGSC0003DMT400022537	Potato	plastid	66.59	69.77
PGSC0003DMT400071658	Potato	golgi	65.38	69.74
Solyc12g005880.1.1	Tomato	plastid	66.11	69.62
CDX97371	Canola	cytosol, endoplasmic reticulum	67.31	69.14
CDY14294	Canola	cytosol, golgi	66.59	68.23
Bra010422.1-P	Field mustard	cytosol, golgi	66.59	68.23
CDX92791	Canola	cytosol	65.87	68.16
AT4G26940.1	Thale cress	endoplasmic reticulum, golgi	66.35	67.81
CDY46675	Canola	cytosol	66.59	67.56
Zm00001d053825_P002	Maize	golgi	64.66	66.92
Bra019081.1-P	Field mustard	cytosol	61.3	66.06
Bra015395.1-P	Field mustard	plastid	67.31	65.73
Zm00001d016891_P001	Maize	plasma membrane	59.86	62.56
CDY68943	Canola	golgi	51.68	60.91
CDY11037	Canola	golgi, mitochondrion, plastid	52.4	60.72
Zm00001d014361_P001	Maize	golgi	60.58	60.43
Zm00001d000099_P003	Maize	golgi	56.73	55.92
Zm00001d020692_P002	Maize	golgi, mitochondrion	54.81	55.07
Zm00001d012234_P002	Maize	mitochondrion	53.37	52.48
Zm00001d035090_P002	Maize	mitochondrion	42.55	39.6
Zm00001d045146_P002	Maize	plasma membrane	30.29	35.69
Zm00001d050251_P002	Maize	mitochondrion	30.53	31.28
Zm00001d045297_P001	Maize	plastid	18.51	30.08
Zm00001d032267_P003	Maize	mitochondrion	29.09	29.8
Zm00001d036240_P003	Maize	plastid	25.72	29.48
Zm00001d009997_P001	Maize	plasma membrane	23.32	25.87

Protein Annotations

EntrezGene:100273113	MapMan:21.4.1.1.5.3	UniProt:A0A1D6GMC4	ProteinID:AQK64432.1	ncoils:Coil	InterPro:DUF4094
GO:GO:0000139	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0008378	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0019538	InterPro:Glyco_trans_31	PFAM:PF01762	PFAM:PF13334
PANTHER:PTHR11214	PANTHER:PTHR11214:SF5	TMHMM:TMhelix	UniParc:UPI00022187DB	EnsemblPlantsGene:Zm00001d013804	EnsemblPlants:Zm00001d013804_P003
EnsemblPlants:Zm00001d013804_T003	SEG:seg	:	:	:	:

Description

Probable beta-13-galactosyltransferase 4

Coordinates

chr5:+:20982616..20986752

Molecular Weight (calculated)

46218.9 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.408

Length

416 amino acids

Sequence
(BLAST)

001: MKMSFNKSSG SRGWGQGAAA GGGGDELVLR GSISKKWTFL LCFGSFCIGL LFTNRMWTVP EPKEIIRRST LEVEKMSLVD GDCAPKSAGD ARDVPGEVPR
101: TQDVIQTLDR TISNLEMELA SAKATQESML HGAAGAPVPE PTGKRKHFMV VGVNTAFSSR KRRDSVRATW MPQGEKRRTM EEEKGIVIRF VIGHSATPGG
201: ILDRAIDAED RKHGDFMRLD HVEGYLELAA KTKAYFVAAV STWDAEYYVK VDDDVHVNIA TLGNTLARHR SKPRAYVGCM KSGPVLAQKG VRYHEPEYWK
301: FGEWGNRYFR HASGQLYAIS KDLASYIALN QHVLHKYANE DVSLGSWFIG LDVEHVDDRR LCCGTPPDCE WKAQAGNACV ASFDWSCSGI CKSADRIKEV
401: HQRCGESENA IWNAEF

Best Arabidopsis Sequence Match ( AT1G05170.2 )
(BLAST)

001: MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL VSEGCNPKAL YQKEVKRDPQ ALFGEVANTH IALQTLDKTI
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF

Arabidopsis Description

B3GALT2Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3U9]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.