CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26940.1	CDY03088	AT2G01950.1	19000166
AT4G26940.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010422.1-P	Field mustard	cytosol, golgi	100.0	100.0
CDX97371	Canola	cytosol, endoplasmic reticulum	98.52	98.77
AT4G26940.1	Thale cress	endoplasmic reticulum, golgi	92.36	92.14
CDX92791	Canola	cytosol	90.89	91.79
CDY46675	Canola	cytosol	91.13	90.24
CDY68943	Canola	golgi	71.43	82.15
CDY11037	Canola	golgi, mitochondrion, plastid	72.41	81.89
VIT_19s0090g00560.t01	Wine grape	cytosol, golgi	75.12	75.31
Solyc07g064670.2.1	Tomato	nucleus	73.89	73.53
PGSC0003DMT400057471	Potato	golgi	73.89	73.53
PGSC0003DMT400071658	Potato	golgi	68.47	71.28
GSMUA_Achr4P33450_001	Banana	golgi	70.44	70.97
GSMUA_Achr4P23710_001	Banana	golgi	72.17	70.94
CDY48266	Canola	golgi	71.43	70.9
CDY46836	Canola	plastid	70.94	70.76
CDY49507	Canola	plastid	71.43	70.73
GSMUA_Achr7P00260_001	Banana	golgi	70.44	70.44
CDY12206	Canola	golgi	70.94	70.42
Os03t0577500-01	Rice	golgi, peroxisome, plastid	67.98	67.98
EER91307	Sorghum	golgi, peroxisome, plasma membrane	68.47	67.97
HORVU7Hr1G081720.2	Barley	cytosol	66.26	67.42
TraesCS7A01G330900.1	Wheat	cytosol, golgi, mitochondrion, plastid	66.26	67.25
TraesCS7D01G339200.1	Wheat	cytosol, golgi, mitochondrion, plastid	66.26	67.25
TraesCS7B01G241500.2	Wheat	cytosol, golgi, mitochondrion, nucleus	66.01	67.0
Zm00001d013804_P003	Maize	golgi, plastid, vacuole	68.23	66.59
CDY49800	Canola	mitochondrion	59.61	61.89
CDX97981	Canola	mitochondrion	58.62	60.87
CDX93812	Canola	golgi	57.39	59.59
CDY67379	Canola	vacuole	55.91	57.61
CDX73278	Canola	vacuole	55.66	57.36
CDX88390	Canola	golgi	53.45	56.81
CDX87501	Canola	golgi	53.45	56.66
CDX96559	Canola	cytosol, nucleus, peroxisome	48.28	56.16
CDY04694	Canola	golgi	50.25	54.55
CDY30641	Canola	golgi	49.75	54.01
CDY54843	Canola	golgi	57.64	53.42
CDY38836	Canola	golgi	50.49	52.56
CDY00412	Canola	golgi	50.0	51.13
CDY01303	Canola	golgi	45.57	47.93
CDY49171	Canola	mitochondrion	33.99	41.19
CDX96213	Canola	mitochondrion	33.99	41.19
CDY14386	Canola	mitochondrion	34.24	41.0
CDY35642	Canola	mitochondrion	33.74	40.53
CDX75222	Canola	plastid	31.28	36.49
CDX68818	Canola	plastid	31.28	36.39
CDY58927	Canola	cytosol	30.79	36.34
CDY11534	Canola	plastid	30.54	35.94
CDY42221	Canola	cytosol	10.84	33.85
CDY35316	Canola	plastid	27.83	31.13
CDX77030	Canola	plastid	27.59	30.85
CDX82456	Canola	mitochondrion	25.86	30.7
CDX75799	Canola	mitochondrion	25.86	30.7
CDX97620	Canola	mitochondrion	25.62	30.41
CDY25866	Canola	mitochondrion	25.86	30.17
CDY55849	Canola	mitochondrion	25.62	29.89
CDY55848	Canola	mitochondrion	25.62	29.89
CDX98518	Canola	mitochondrion	25.62	29.63

Protein Annotations

MapMan:21.4.1.1.5.3	Gene3D:3.90.550.50	GO:A0A078FN25	UniProt:A0A078FN25	EnsemblPlants:CDY14294	ProteinID:CDY14294
ProteinID:CDY14294.1	ncoils:Coil	InterPro:DUF4094	GO:GO:0000139	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975
GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008378	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00078891001	InterPro:Glyco_trans_31	PFAM:PF01762	PFAM:PF13334	PANTHER:PTHR11214	PANTHER:PTHR11214:SF5
UniPathway:UPA00378	UniParc:UPI0002545855	SEG:seg	:	:	:

Description

BnaA08g14250DHexosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078FN25]

Coordinates

chrLK032041:+:727193..729850

Molecular Weight (calculated)

45641.2 Da

IEP (calculated)

7.131

GRAVY (calculated)

-0.401

Length

406 amino acids

Sequence
(BLAST)

001: MSMKHHHRGG LELSASKSFV SKKLTFFLCI GFFCAGTLFS DRMWPEPEAN VVSREASDER LHLVSDDCDS SKKSLKLESK DSLGEAYKSP DAIQTLDKTI
101: STLEMELVAA RAAQESIMNG SPVSDDFKLP ETATRRKYLM VVGVNTAFSS RKRRDSVRAT WMPPGEDRKK LEEDKGIIMR FVIGHSATPG GILDRAIQAE
201: ESKHGDFLRL DHVEGYLELS AKTKSYFTTA YALWDADFYV KVDDDVHVNI ATLGAELARY RMKPRVYIGC MKSGPVLAQK GVRYHEPEYW KFGEEGNKYF
301: RHATGQLYAI SRELASYISI NQNVLHKYVN EDVSLGSWFL GLDVEHVDDR RLCCGTTDCE WKAQAGNMCV ASFDWSCSGI CRSADRMKDV HRRCGEGPNA
401: LLAASF

Best Arabidopsis Sequence Match ( AT4G26940.1 )
(BLAST)

001: MSLKHHHRGL ELSASKSFVS KKWTLFLCIG FFCAGILFSD RMWPEPESNV VSRDTVASDE RLRLESEDCD SSKKGLKRES KDILGDVYKS PDAIQTLDKT
101: ISKLETELAD ARAAQESIMN GSPVSDDFKL PETVTKRKYL MVVGVNTAFS SRKRRDSVRA TWMPPGEERK KLEEEKGIVM RFVIGHSSTP GGILDRAIQA
201: EESKHGDFLR LDHVEGYLEL SAKTKTYFTT AFAMWDADFY VKVDDDVHVN IATLGAELAR YRMKPRVYIG CMKSGPVLAQ KGVRYHEPEY WKFGEEGNKY
301: FRHATGQLYA ISRELASYIS INQNVLHKYV NEDVSLGSWF LGLDVEHVDD RRLCCGTTDC EWKAQAGNIC VASFDWSCSG ICRSADRMKD VHRRCGEGEK
401: ALLAASF

Arabidopsis Description

B3GALT4Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178V3W5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.