CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97620	Canola	mitochondrion	95.73	98.25
CDX82456	Canola	mitochondrion	90.03	92.4
CDX75799	Canola	mitochondrion	88.6	90.94
AT3G14960.1	Thale cress	mitochondrion	86.61	88.63
CDY55848	Canola	mitochondrion	84.62	85.34
CDY25866	Canola	mitochondrion	84.62	85.34
CDY55849	Canola	mitochondrion	84.33	85.06
PGSC0003DMT400054913	Potato	golgi, mitochondrion	72.65	73.28
Solyc10g007200.2.1	Tomato	golgi, mitochondrion	72.08	72.7
Solyc07g062590.2.1	Tomato	plastid	71.79	71.79
KRH55102	Soybean	plastid	68.95	71.6
VIT_19s0014g01490.t01	Wine grape	golgi, mitochondrion, plastid	70.94	71.55
PGSC0003DMT400032365	Potato	plastid	71.23	71.43
KRH26222	Soybean	plastid	68.09	70.71
KRH21986	Soybean	mitochondrion	67.24	70.24
CDY42221	Canola	cytosol	25.07	67.69
GSMUA_Achr7P14080_001	Banana	golgi, plastid	65.81	67.15
TraesCS7A01G115200.1	Wheat	plastid	66.1	63.91
TraesCS7D01G111900.1	Wheat	plastid	65.81	63.64
Zm00001d036240_P003	Maize	plastid	65.53	63.36
KXG19339	Sorghum	golgi, mitochondrion, plastid	65.24	62.91
Os06t0156900-01	Rice	golgi, plastid	65.53	62.5
TraesCS7B01G013300.1	Wheat	plastid	65.24	61.89
GSMUA_Achr10P...	Banana	mitochondrion	53.28	60.71
Zm00001d045297_P001	Maize	plastid	43.02	58.98
CDY35316	Canola	plastid	57.83	55.92
CDX77030	Canola	plastid	57.83	55.92
HORVU7Hr1G024690.2	Barley	mitochondrion, plastid	65.53	53.36
CDX96559	Canola	cytosol, nucleus, peroxisome	30.77	30.95
CDY04694	Canola	golgi	31.91	29.95
CDY38836	Canola	golgi	33.05	29.74
CDY30641	Canola	golgi	31.62	29.68
CDX88390	Canola	golgi	30.77	28.27
CDX87501	Canola	golgi	30.77	28.2
CDY00412	Canola	golgi	31.62	27.96
CDY46836	Canola	plastid	31.34	27.03
CDX97981	Canola	mitochondrion	29.91	26.85
CDY49800	Canola	mitochondrion	29.91	26.85
CDY49507	Canola	plastid	31.05	26.59
CDY01303	Canola	golgi	29.06	26.42
CDX93812	Canola	golgi	29.06	26.09
CDX92791	Canola	cytosol	29.63	25.87
CDY46675	Canola	cytosol	30.2	25.85
CDX97371	Canola	cytosol, endoplasmic reticulum	29.63	25.68
CDY14294	Canola	cytosol, golgi	29.63	25.62
CDY67379	Canola	vacuole	28.49	25.38
CDX73278	Canola	vacuole	28.49	25.38
CDY12206	Canola	golgi	29.06	24.94
CDY48266	Canola	golgi	28.77	24.69
CDY11534	Canola	plastid	23.65	24.06
CDX96213	Canola	mitochondrion	22.79	23.88
CDY49171	Canola	mitochondrion	22.51	23.58
CDX75222	Canola	plastid	23.36	23.56
CDY58927	Canola	cytosol	23.08	23.55
CDX68818	Canola	plastid	23.36	23.5
CDY54843	Canola	golgi	29.06	23.29
CDY35642	Canola	mitochondrion	22.22	23.08
CDY14386	Canola	mitochondrion	22.22	23.01
CDY11037	Canola	golgi, mitochondrion, plastid	22.79	22.28
CDY68943	Canola	golgi	22.22	22.1

Protein Annotations

MapMan:21.4.1.1.5.3	Gene3D:3.90.550.50	GO:A0A078EGT2	EnsemblPlants:CDX98518	ProteinID:CDX98518	ProteinID:CDX98518.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486
GO:GO:0008150	GO:GO:0008152	GO:GO:0008378	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00106162001	InterPro:Glyco_trans_31	PFAM:PF01762	PANTHER:PTHR11214
PANTHER:PTHR11214:SF108	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EE26EB	SEG:seg	:

Description

BnaC05g38570D

Coordinates

chrLK031905:-:719710..721840

Molecular Weight (calculated)

39450.5 Da

IEP (calculated)

8.783

GRAVY (calculated)

-0.219

Length

351 amino acids

Sequence
(BLAST)

001: MPSSPRLKLF HARTSPSTRR STSLIVLTSL AIGLFGFIFG LAAIVFPSRT CLTNSPPKTV RVVWDVAGNS NGGNGLSGGV KRHKVMGFVG IQTGFGSAGR
101: RRALRSTWMP SDPEGLRRLE ESTGLAIRFI IGKTKDEKKM AELRSEIAEY DDFILLDIEE EYSKLPYKTL AFFKAAYALY DSEFYVKADD DIYLRPDRLS
201: LLLAKERSHS QTYLGCLKKG PVFTDPKLKW YEPLADLLGK EYFLHAYGPI YALSADVVTS LVALKNNRQI FSNFSFRMFS NEDVTIGAWM LAMNVNHENH
301: KTLCERECSP YSIAVWDIPK CSGLCNPEKR MLELHKIESC SKSPTLPSED E

Best Arabidopsis Sequence Match ( AT3G14960.1 )
(BLAST)

001: MSSSPKLFHA RPSFFTRRST PLIVFTSLAI GLTGFLFGLS TILFPGLRLS GRSCLTNLPP KTVKIVWDVA GNSIVNGEVK RHKVMGFVGI QTGFRSAGRR
101: RALRNTWMPS DPEGLRRLEE STGLAIRFII GKTKDEAKMV ELRSEVAMYD DFILLDIEEE YSKLPYKTLA FFKAAYALYD SEFYVKADDD IYLRPDRLSL
201: LLAKERGHSQ TYLGCMKKGP VFTDPKLKWY EPLADLLGKE YFLHAYGPIY ALSADVVTSL VALKNNSFRM FSNEDVTIGA WMLAMNVNHE NLHTLCEPEC
301: SPYSIAVWDI PKCSGLCNPE KRMLELHMLE SCSKSPTLPS DDE

Arabidopsis Description

B3GALT13Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q363]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.