CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001576.1-P	Field mustard	mitochondrion	97.95	97.95
CDX82456	Canola	mitochondrion	97.66	97.66
CDX97620	Canola	mitochondrion	89.47	89.47
CDX98518	Canola	mitochondrion	90.94	88.6
AT3G14960.1	Thale cress	mitochondrion	88.6	88.34
CDY25866	Canola	mitochondrion	83.63	82.18
CDY55848	Canola	mitochondrion	83.04	81.61
CDY55849	Canola	mitochondrion	82.75	81.32
PGSC0003DMT400054913	Potato	golgi, mitochondrion	72.81	71.55
Solyc10g007200.2.1	Tomato	golgi, mitochondrion	72.51	71.26
PGSC0003DMT400032365	Potato	plastid	71.93	70.29
VIT_19s0014g01490.t01	Wine grape	golgi, mitochondrion, plastid	71.34	70.11
KRH55102	Soybean	plastid	68.71	69.53
KRH26222	Soybean	plastid	68.71	69.53
Solyc07g062590.2.1	Tomato	plastid	71.34	69.52
KRH21986	Soybean	mitochondrion	66.96	68.15
CDY42221	Canola	cytosol	25.73	67.69
GSMUA_Achr7P14080_001	Banana	golgi, plastid	67.54	67.15
TraesCS7A01G115200.1	Wheat	plastid	67.25	63.36
TraesCS7D01G111900.1	Wheat	plastid	66.96	63.09
Zm00001d036240_P003	Maize	plastid	66.67	62.81
Os06t0156900-01	Rice	golgi, plastid	67.25	62.5
KXG19339	Sorghum	golgi, mitochondrion, plastid	66.37	62.36
TraesCS7B01G013300.1	Wheat	plastid	66.37	61.35
GSMUA_Achr10P...	Banana	mitochondrion	52.63	58.44
Zm00001d045297_P001	Maize	plastid	42.69	57.03
CDX77030	Canola	plastid	57.02	53.72
CDY35316	Canola	plastid	57.02	53.72
HORVU7Hr1G024690.2	Barley	mitochondrion, plastid	66.67	52.9
CDX96559	Canola	cytosol, nucleus, peroxisome	31.58	30.95
CDY38836	Canola	golgi	34.21	30.0
CDY04694	Canola	golgi	32.75	29.95
CDY30641	Canola	golgi	32.46	29.68
CDY00412	Canola	golgi	32.46	27.96
CDX88390	Canola	golgi	30.99	27.75
CDX87501	Canola	golgi	30.99	27.68
CDX97981	Canola	mitochondrion	30.41	26.6
CDX93812	Canola	golgi	30.41	26.6
CDY49800	Canola	mitochondrion	30.41	26.6
CDY01303	Canola	golgi	29.82	26.42
CDY46836	Canola	plastid	31.29	26.29
CDX97371	Canola	cytosol, endoplasmic reticulum	30.99	26.17
CDX92791	Canola	cytosol	30.7	26.12
CDY46675	Canola	cytosol	31.29	26.1
CDY67379	Canola	vacuole	29.82	25.89
CDX73278	Canola	vacuole	29.82	25.89
CDY14294	Canola	cytosol, golgi	30.7	25.86
CDY49507	Canola	plastid	30.99	25.85
CDY48266	Canola	golgi	29.24	24.45
CDY12206	Canola	golgi	29.24	24.45
CDY11534	Canola	plastid	23.98	23.77
CDY54843	Canola	golgi	30.41	23.74
CDY49171	Canola	mitochondrion	22.81	23.28
CDX96213	Canola	mitochondrion	22.81	23.28
CDY58927	Canola	cytosol	23.39	23.26
CDY35642	Canola	mitochondrion	22.81	23.08
CDY14386	Canola	mitochondrion	22.81	23.01
CDX75222	Canola	plastid	23.39	22.99
CDX68818	Canola	plastid	23.39	22.92
CDY11037	Canola	golgi, mitochondrion, plastid	23.98	22.84
CDY68943	Canola	golgi	23.1	22.38

Protein Annotations

MapMan:21.4.1.1.5.3	GO:A0A078CI98	EnsemblPlants:CDX75799	ProteinID:CDX75799	ProteinID:CDX75799.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0008378	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00123752001	InterPro:Glyco_trans_31	PFAM:PF01762	PANTHER:PTHR11214	PANTHER:PTHR11214:SF108
TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EC5B36	:	:	:

Description

BnaC03g38820D

Coordinates

chrLK031805:-:781691..784046

Molecular Weight (calculated)

38616.8 Da

IEP (calculated)

9.404

GRAVY (calculated)

-0.222

Length

342 amino acids

Sequence
(BLAST)

001: MPSSPRLKLF HARPSRRPTS LIVIASIAIG LFGFLFGLSA IIFPGIRLSA RTCLTNSPPK TVRIVWDVAG NRNTNGGVKR HKVMGFVGIQ TGFSSAGRRR
101: ALRNTWMPSD PQGLRRLEES RGLVIRFIIG KTKDEAKMAE LRREIAEYDD FILLDIEEEY SKLPYKTLAF FKAAYALYDS AFYVKADDDI YLRPDRLSLL
201: LAKERSHSQT YLGCLKKGPV FTDPKLKWYE PLADLLGQEY FLHAYGPIYA LSADVVTSLV ALKKNSFRMF SNEDVTIGAW MLAMNVNHEN HKTLCEPECS
301: PSSIAVWDIP KCSGLCNPEK RMLELHKRES CSKSPTLPSE DE

Best Arabidopsis Sequence Match ( AT3G14960.1 )
(BLAST)

001: MSSSPKLFHA RPSFFTRRST PLIVFTSLAI GLTGFLFGLS TILFPGLRLS GRSCLTNLPP KTVKIVWDVA GNSIVNGEVK RHKVMGFVGI QTGFRSAGRR
101: RALRNTWMPS DPEGLRRLEE STGLAIRFII GKTKDEAKMV ELRSEVAMYD DFILLDIEEE YSKLPYKTLA FFKAAYALYD SEFYVKADDD IYLRPDRLSL
201: LLAKERGHSQ TYLGCMKKGP VFTDPKLKWY EPLADLLGKE YFLHAYGPIY ALSADVVTSL VALKNNSFRM FSNEDVTIGA WMLAMNVNHE NLHTLCEPEC
301: SPYSIAVWDI PKCSGLCNPE KRMLELHMLE SCSKSPTLPS DDE

Arabidopsis Description

B3GALT13Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q363]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.