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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY14294 Canola cytosol, golgi 98.77 98.52
AT4G26940.1 Thale cress endoplasmic reticulum, golgi 93.58 93.12
CDX92791 Canola cytosol 92.1 92.79
CDY46675 Canola cytosol 92.35 91.22
CDY68943 Canola golgi 72.59 83.29
CDY11037 Canola golgi, mitochondrion, plastid 73.33 82.73
VIT_19s0090g00560.t01 Wine grape cytosol, golgi 75.8 75.8
PGSC0003DMT400057471 Potato golgi 74.57 74.02
Solyc07g064670.2.1 Tomato nucleus 74.57 74.02
PGSC0003DMT400071658 Potato golgi 69.14 71.79
GSMUA_Achr4P33450_001 Banana golgi 71.11 71.46
CDY48266 Canola golgi 72.1 71.39
GSMUA_Achr4P23710_001 Banana golgi 72.59 71.19
CDY46836 Canola plastid 71.36 71.01
CDY49507 Canola plastid 71.85 70.98
CDY12206 Canola golgi 71.6 70.9
GSMUA_Achr7P00260_001 Banana golgi 70.86 70.69
Os03t0577500-01 Rice golgi, peroxisome, plastid 68.4 68.23
EER91307 Sorghum golgi, peroxisome, plasma membrane 68.89 68.22
HORVU7Hr1G081720.2 Barley cytosol 66.91 67.92
TraesCS7D01G339200.1 Wheat cytosol, golgi, mitochondrion, plastid 66.91 67.75
TraesCS7A01G330900.1 Wheat cytosol, golgi, mitochondrion, plastid 66.67 67.5
TraesCS7B01G241500.2 Wheat cytosol, golgi, mitochondrion, nucleus 66.67 67.5
Zm00001d013804_P003 Maize golgi, plastid, vacuole 69.14 67.31
CDY49800 Canola mitochondrion 59.01 61.13
CDX97981 Canola mitochondrion 59.01 61.13
CDX93812 Canola golgi 58.02 60.1
CDY67379 Canola vacuole 56.79 58.38
CDX73278 Canola vacuole 56.54 58.12
CDX88390 Canola golgi 54.32 57.59
CDX87501 Canola golgi 54.32 57.44
CDX96559 Canola cytosol, nucleus, peroxisome 48.89 56.73
CDY04694 Canola golgi 51.11 55.35
CDY30641 Canola golgi 50.62 54.81
CDY54843 Canola golgi 58.27 53.88
CDY38836 Canola golgi 51.36 53.33
CDY00412 Canola golgi 50.37 51.39
CDY01303 Canola golgi 45.93 48.19
CDX96213 Canola mitochondrion 34.07 41.19
CDY14386 Canola mitochondrion 34.32 41.0
CDY49171 Canola mitochondrion 33.58 40.6
CDY35642 Canola mitochondrion 33.83 40.53
CDY58927 Canola cytosol 31.36 36.92
CDX75222 Canola plastid 31.6 36.78
CDX68818 Canola plastid 31.6 36.68
CDY11534 Canola plastid 31.11 36.52
CDY42221 Canola cytosol 10.86 33.85
CDY35316 Canola plastid 27.9 31.13
CDX75799 Canola mitochondrion 26.17 30.99
CDX77030 Canola plastid 27.65 30.85
CDX82456 Canola mitochondrion 25.93 30.7
CDX97620 Canola mitochondrion 25.68 30.41
CDY25866 Canola mitochondrion 25.93 30.17
CDY55849 Canola mitochondrion 25.68 29.89
CDY55848 Canola mitochondrion 25.68 29.89
CDX98518 Canola mitochondrion 25.68 29.63
Protein Annotations
MapMan:21.4.1.1.5.3Gene3D:3.90.550.50GO:A0A078E835EnsemblPlants:CDX97371ProteinID:CDX97371ProteinID:CDX97371.1
ncoils:CoilInterPro:DUF4094GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005975
GO:GO:0006464GO:GO:0006486GO:GO:0008150GO:GO:0008152GO:GO:0008378GO:GO:0009058
GO:GO:0009987GO:GO:0016020GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00104470001InterPro:Glyco_trans_31
PFAM:PF01762PFAM:PF13334PANTHER:PTHR11214PANTHER:PTHR11214:SF5UniPathway:UPA00378UniParc:UPI0004EF018C
SEG:seg:::::
Description
BnaC08g12360D
Coordinates
chrLK031899:-:99324..102108
Molecular Weight (calculated)
45628.1 Da
IEP (calculated)
7.315
GRAVY (calculated)
-0.419
Length
405 amino acids
Sequence
(BLAST)
001: MSMKHHHRGL ELSASKSFVS KKWTFFLCIG FFCAGTLFSD RMWPEPEANV VSREASDERL HLVSDDCDSS KKSLKLESKD SLGEAYKSPD AIQTLDKTIS
101: TLEMELAAAR AAQESIMNGS PVSDDFKLPE TATRRKYLMV VGVNTAFSSR KRRDSVRATW MPPGENRKKL EEEKGIVMRF VIGHSATPGG ILDRAIQAEE
201: SKHGDFLRLD HVEGYLELSA KTKSYFTTAY ALWDADFYVK VDDDVHVNIA TLGAELARYR MKPRVYIGCM KSGPVLAQKG VRYHEPEYWK FGEEGNKYFR
301: HATGQLYAIS RELASYISIN QNVLHKYVNE DVSLGSWFLG LDVEHVDDRR LCCGTTDCEW KAQAGNMCVA SFDWSCSGIC RSADRMKDVH RRCGEGPNAL
401: LAASF
Best Arabidopsis Sequence Match ( AT4G26940.1 )
(BLAST)
001: MSLKHHHRGL ELSASKSFVS KKWTLFLCIG FFCAGILFSD RMWPEPESNV VSRDTVASDE RLRLESEDCD SSKKGLKRES KDILGDVYKS PDAIQTLDKT
101: ISKLETELAD ARAAQESIMN GSPVSDDFKL PETVTKRKYL MVVGVNTAFS SRKRRDSVRA TWMPPGEERK KLEEEKGIVM RFVIGHSSTP GGILDRAIQA
201: EESKHGDFLR LDHVEGYLEL SAKTKTYFTT AFAMWDADFY VKVDDDVHVN IATLGAELAR YRMKPRVYIG CMKSGPVLAQ KGVRYHEPEY WKFGEEGNKY
301: FRHATGQLYA ISRELASYIS INQNVLHKYV NEDVSLGSWF LGLDVEHVDD RRLCCGTTDC EWKAQAGNIC VASFDWSCSG ICRSADRMKD VHRRCGEGEK
401: ALLAASF
Arabidopsis Description
B3GALT4Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178V3W5]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.