Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G26940.1 | CDY03088 | AT2G01950.1 | 19000166 |
AT4G26940.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY14294 | Canola | cytosol, golgi | 98.77 | 98.52 |
AT4G26940.1 | Thale cress | endoplasmic reticulum, golgi | 93.58 | 93.12 |
CDX92791 | Canola | cytosol | 92.1 | 92.79 |
CDY46675 | Canola | cytosol | 92.35 | 91.22 |
CDY68943 | Canola | golgi | 72.59 | 83.29 |
CDY11037 | Canola | golgi, mitochondrion, plastid | 73.33 | 82.73 |
VIT_19s0090g00560.t01 | Wine grape | cytosol, golgi | 75.8 | 75.8 |
PGSC0003DMT400057471 | Potato | golgi | 74.57 | 74.02 |
Solyc07g064670.2.1 | Tomato | nucleus | 74.57 | 74.02 |
PGSC0003DMT400071658 | Potato | golgi | 69.14 | 71.79 |
GSMUA_Achr4P33450_001 | Banana | golgi | 71.11 | 71.46 |
CDY48266 | Canola | golgi | 72.1 | 71.39 |
GSMUA_Achr4P23710_001 | Banana | golgi | 72.59 | 71.19 |
CDY46836 | Canola | plastid | 71.36 | 71.01 |
CDY49507 | Canola | plastid | 71.85 | 70.98 |
CDY12206 | Canola | golgi | 71.6 | 70.9 |
GSMUA_Achr7P00260_001 | Banana | golgi | 70.86 | 70.69 |
Os03t0577500-01 | Rice | golgi, peroxisome, plastid | 68.4 | 68.23 |
EER91307 | Sorghum | golgi, peroxisome, plasma membrane | 68.89 | 68.22 |
HORVU7Hr1G081720.2 | Barley | cytosol | 66.91 | 67.92 |
TraesCS7D01G339200.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 66.91 | 67.75 |
TraesCS7A01G330900.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 66.67 | 67.5 |
TraesCS7B01G241500.2 | Wheat | cytosol, golgi, mitochondrion, nucleus | 66.67 | 67.5 |
Zm00001d013804_P003 | Maize | golgi, plastid, vacuole | 69.14 | 67.31 |
CDY49800 | Canola | mitochondrion | 59.01 | 61.13 |
CDX97981 | Canola | mitochondrion | 59.01 | 61.13 |
CDX93812 | Canola | golgi | 58.02 | 60.1 |
CDY67379 | Canola | vacuole | 56.79 | 58.38 |
CDX73278 | Canola | vacuole | 56.54 | 58.12 |
CDX88390 | Canola | golgi | 54.32 | 57.59 |
CDX87501 | Canola | golgi | 54.32 | 57.44 |
CDX96559 | Canola | cytosol, nucleus, peroxisome | 48.89 | 56.73 |
CDY04694 | Canola | golgi | 51.11 | 55.35 |
CDY30641 | Canola | golgi | 50.62 | 54.81 |
CDY54843 | Canola | golgi | 58.27 | 53.88 |
CDY38836 | Canola | golgi | 51.36 | 53.33 |
CDY00412 | Canola | golgi | 50.37 | 51.39 |
CDY01303 | Canola | golgi | 45.93 | 48.19 |
CDX96213 | Canola | mitochondrion | 34.07 | 41.19 |
CDY14386 | Canola | mitochondrion | 34.32 | 41.0 |
CDY49171 | Canola | mitochondrion | 33.58 | 40.6 |
CDY35642 | Canola | mitochondrion | 33.83 | 40.53 |
CDY58927 | Canola | cytosol | 31.36 | 36.92 |
CDX75222 | Canola | plastid | 31.6 | 36.78 |
CDX68818 | Canola | plastid | 31.6 | 36.68 |
CDY11534 | Canola | plastid | 31.11 | 36.52 |
CDY42221 | Canola | cytosol | 10.86 | 33.85 |
CDY35316 | Canola | plastid | 27.9 | 31.13 |
CDX75799 | Canola | mitochondrion | 26.17 | 30.99 |
CDX77030 | Canola | plastid | 27.65 | 30.85 |
CDX82456 | Canola | mitochondrion | 25.93 | 30.7 |
CDX97620 | Canola | mitochondrion | 25.68 | 30.41 |
CDY25866 | Canola | mitochondrion | 25.93 | 30.17 |
CDY55849 | Canola | mitochondrion | 25.68 | 29.89 |
CDY55848 | Canola | mitochondrion | 25.68 | 29.89 |
CDX98518 | Canola | mitochondrion | 25.68 | 29.63 |
Protein Annotations
MapMan:21.4.1.1.5.3 | Gene3D:3.90.550.50 | GO:A0A078E835 | EnsemblPlants:CDX97371 | ProteinID:CDX97371 | ProteinID:CDX97371.1 |
ncoils:Coil | InterPro:DUF4094 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005975 |
GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008378 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00104470001 | InterPro:Glyco_trans_31 |
PFAM:PF01762 | PFAM:PF13334 | PANTHER:PTHR11214 | PANTHER:PTHR11214:SF5 | UniPathway:UPA00378 | UniParc:UPI0004EF018C |
SEG:seg | : | : | : | : | : |
Description
BnaC08g12360D
Coordinates
chrLK031899:-:99324..102108
Molecular Weight (calculated)
45628.1 Da
IEP (calculated)
7.315
GRAVY (calculated)
-0.419
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMKHHHRGL ELSASKSFVS KKWTFFLCIG FFCAGTLFSD RMWPEPEANV VSREASDERL HLVSDDCDSS KKSLKLESKD SLGEAYKSPD AIQTLDKTIS
101: TLEMELAAAR AAQESIMNGS PVSDDFKLPE TATRRKYLMV VGVNTAFSSR KRRDSVRATW MPPGENRKKL EEEKGIVMRF VIGHSATPGG ILDRAIQAEE
201: SKHGDFLRLD HVEGYLELSA KTKSYFTTAY ALWDADFYVK VDDDVHVNIA TLGAELARYR MKPRVYIGCM KSGPVLAQKG VRYHEPEYWK FGEEGNKYFR
301: HATGQLYAIS RELASYISIN QNVLHKYVNE DVSLGSWFLG LDVEHVDDRR LCCGTTDCEW KAQAGNMCVA SFDWSCSGIC RSADRMKDVH RRCGEGPNAL
401: LAASF
101: TLEMELAAAR AAQESIMNGS PVSDDFKLPE TATRRKYLMV VGVNTAFSSR KRRDSVRATW MPPGENRKKL EEEKGIVMRF VIGHSATPGG ILDRAIQAEE
201: SKHGDFLRLD HVEGYLELSA KTKSYFTTAY ALWDADFYVK VDDDVHVNIA TLGAELARYR MKPRVYIGCM KSGPVLAQKG VRYHEPEYWK FGEEGNKYFR
301: HATGQLYAIS RELASYISIN QNVLHKYVNE DVSLGSWFLG LDVEHVDDRR LCCGTTDCEW KAQAGNMCVA SFDWSCSGIC RSADRMKDVH RRCGEGPNAL
401: LAASF
001: MSLKHHHRGL ELSASKSFVS KKWTLFLCIG FFCAGILFSD RMWPEPESNV VSRDTVASDE RLRLESEDCD SSKKGLKRES KDILGDVYKS PDAIQTLDKT
101: ISKLETELAD ARAAQESIMN GSPVSDDFKL PETVTKRKYL MVVGVNTAFS SRKRRDSVRA TWMPPGEERK KLEEEKGIVM RFVIGHSSTP GGILDRAIQA
201: EESKHGDFLR LDHVEGYLEL SAKTKTYFTT AFAMWDADFY VKVDDDVHVN IATLGAELAR YRMKPRVYIG CMKSGPVLAQ KGVRYHEPEY WKFGEEGNKY
301: FRHATGQLYA ISRELASYIS INQNVLHKYV NEDVSLGSWF LGLDVEHVDD RRLCCGTTDC EWKAQAGNIC VASFDWSCSG ICRSADRMKD VHRRCGEGEK
401: ALLAASF
101: ISKLETELAD ARAAQESIMN GSPVSDDFKL PETVTKRKYL MVVGVNTAFS SRKRRDSVRA TWMPPGEERK KLEEEKGIVM RFVIGHSSTP GGILDRAIQA
201: EESKHGDFLR LDHVEGYLEL SAKTKTYFTT AFAMWDADFY VKVDDDVHVN IATLGAELAR YRMKPRVYIG CMKSGPVLAQ KGVRYHEPEY WKFGEEGNKY
301: FRHATGQLYA ISRELASYIS INQNVLHKYV NEDVSLGSWF LGLDVEHVDD RRLCCGTTDC EWKAQAGNIC VASFDWSCSG ICRSADRMKD VHRRCGEGEK
401: ALLAASF
Arabidopsis Description
B3GALT4Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178V3W5]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.