CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26940.1	CDY03088	AT2G01950.1	19000166
AT4G26940.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46675	Canola	cytosol	96.52	94.63
CDX97371	Canola	cytosol, endoplasmic reticulum	92.79	92.1
CDY14294	Canola	cytosol, golgi	91.79	90.89
AT4G26940.1	Thale cress	endoplasmic reticulum, golgi	90.8	89.68
CDY68943	Canola	golgi	77.11	87.82
CDY11037	Canola	golgi, mitochondrion, plastid	77.36	86.63
VIT_19s0090g00560.t01	Wine grape	cytosol, golgi	73.63	73.09
PGSC0003DMT400057471	Potato	golgi	73.63	72.55
Solyc07g064670.2.1	Tomato	nucleus	73.13	72.06
CDY48266	Canola	golgi	71.89	70.66
CDY46836	Canola	plastid	71.39	70.52
CDY49507	Canola	plastid	71.89	70.49
CDY12206	Canola	golgi	71.39	70.17
PGSC0003DMT400071658	Potato	golgi	67.66	69.74
GSMUA_Achr4P33450_001	Banana	golgi	69.15	68.98
GSMUA_Achr4P23710_001	Banana	golgi	70.65	68.77
GSMUA_Achr7P00260_001	Banana	golgi	68.91	68.23
EER91307	Sorghum	golgi, peroxisome, plasma membrane	68.41	67.24
Os03t0577500-01	Rice	golgi, peroxisome, plastid	67.66	67.0
HORVU7Hr1G081720.2	Barley	cytosol	66.17	66.67
TraesCS7D01G339200.1	Wheat	cytosol, golgi, mitochondrion, plastid	66.17	66.5
TraesCS7A01G330900.1	Wheat	cytosol, golgi, mitochondrion, plastid	65.92	66.25
TraesCS7B01G241500.2	Wheat	cytosol, golgi, mitochondrion, nucleus	65.92	66.25
Zm00001d013804_P003	Maize	golgi, plastid, vacuole	68.16	65.87
CDX97981	Canola	mitochondrion	58.96	60.61
CDY49800	Canola	mitochondrion	58.71	60.36
CDX93812	Canola	golgi	57.46	59.08
CDY67379	Canola	vacuole	56.22	57.36
CDX73278	Canola	vacuole	55.97	57.11
CDX87501	Canola	golgi	53.98	56.66
CDX88390	Canola	golgi	53.23	56.02
CDX96559	Canola	cytosol, nucleus, peroxisome	48.01	55.3
CDY04694	Canola	golgi	50.25	54.01
CDY30641	Canola	golgi	50.0	53.74
CDY54843	Canola	golgi	57.71	52.97
CDY38836	Canola	golgi	50.99	52.56
CDY00412	Canola	golgi	50.75	51.39
CDY01303	Canola	golgi	46.77	48.7
CDX96213	Canola	mitochondrion	34.08	40.9
CDY14386	Canola	mitochondrion	34.33	40.71
CDY49171	Canola	mitochondrion	33.58	40.3
CDY35642	Canola	mitochondrion	33.83	40.24
CDY58927	Canola	cytosol	31.34	36.63
CDY11534	Canola	plastid	31.09	36.23
CDX75222	Canola	plastid	31.09	35.92
CDX68818	Canola	plastid	31.09	35.82
CDY42221	Canola	cytosol	10.95	33.85
CDY35316	Canola	plastid	28.86	31.96
CDX77030	Canola	plastid	28.61	31.68
CDX82456	Canola	mitochondrion	26.12	30.7
CDX75799	Canola	mitochondrion	26.12	30.7
CDY25866	Canola	mitochondrion	26.12	30.17
CDX97620	Canola	mitochondrion	25.62	30.12
CDY55849	Canola	mitochondrion	25.87	29.89
CDY55848	Canola	mitochondrion	25.87	29.89
CDX98518	Canola	mitochondrion	25.87	29.63

Protein Annotations

MapMan:21.4.1.1.5.3	Gene3D:3.90.550.50	GO:A0A078DU38	EnsemblPlants:CDX92791	ProteinID:CDX92791	ProteinID:CDX92791.1
InterPro:DUF4094	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005975	GO:GO:0006464
GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008378	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00154616001	InterPro:Glyco_trans_31	PFAM:PF01762
PFAM:PF13334	PANTHER:PTHR11214	PANTHER:PTHR11214:SF5	UniPathway:UPA00378	UniParc:UPI0004EE7E1C	SEG:seg

Description

BnaC07g40490D

Coordinates

chrLK031873:+:835385..837958

Molecular Weight (calculated)

45269.8 Da

IEP (calculated)

7.534

GRAVY (calculated)

-0.403

Length

402 amino acids

Sequence
(BLAST)

001: MSLKHHHHHR GVELSAASKS FVSKKWAFLL CIGFFCAGTL FSDRMWPEPE SNVASREAAS DERLLLMSED CDSSKKTSLG EVYKSPDATQ TLDKTISTLE
101: MELAAARAAQ ESIVNGSPVS DEFKLPETAT KRKYLMVVGI NTAFNSRKRR DSVRATWMPP GEERKKLEEE KGIVMRFVIG HSATPGGILD RAIQAEESKH
201: GDFLRLDHVE GYLELSAKTK SYFTTAFALW DADFYVKVDD DVHVNIATLG AELARYRMKP RVYIGCMKSG PVLAQKGVRY HEPEYWKFGE EGNRYFRHAT
301: GQLYAVSREL ASYISINKNV LHKYVNEDVS LGSWFLGLDV EHVDDRRLCC ATRDCEWKAQ AGNMCVASFD WSCSGICRSA DRMKDVHRRC GEGPNALMAA
401: SF

Best Arabidopsis Sequence Match ( AT4G26940.1 )
(BLAST)

001: MSLKHHHRGL ELSASKSFVS KKWTLFLCIG FFCAGILFSD RMWPEPESNV VSRDTVASDE RLRLESEDCD SSKKGLKRES KDILGDVYKS PDAIQTLDKT
101: ISKLETELAD ARAAQESIMN GSPVSDDFKL PETVTKRKYL MVVGVNTAFS SRKRRDSVRA TWMPPGEERK KLEEEKGIVM RFVIGHSSTP GGILDRAIQA
201: EESKHGDFLR LDHVEGYLEL SAKTKTYFTT AFAMWDADFY VKVDDDVHVN IATLGAELAR YRMKPRVYIG CMKSGPVLAQ KGVRYHEPEY WKFGEEGNKY
301: FRHATGQLYA ISRELASYIS INQNVLHKYV NEDVSLGSWF LGLDVEHVDD RRLCCGTTDC EWKAQAGNIC VASFDWSCSG ICRSADRMKD VHRRCGEGEK
401: ALLAASF

Arabidopsis Description

B3GALT4Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178V3W5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.