CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 2
plastid 1
mitochondrion 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26940.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013804_P003	Maize	golgi, plastid, vacuole	91.44	89.9
Os03t0577500-01	Rice	golgi, peroxisome, plastid	88.51	89.16
HORVU7Hr1G081720.2	Barley	cytosol	80.93	82.96
TraesCS7B01G241500.2	Wheat	cytosol, golgi, mitochondrion, nucleus	80.93	82.75
TraesCS7A01G330900.1	Wheat	cytosol, golgi, mitochondrion, plastid	80.68	82.5
TraesCS7D01G339200.1	Wheat	cytosol, golgi, mitochondrion, plastid	80.2	82.0
GSMUA_Achr4P33450_001	Banana	golgi	75.06	76.18
GSMUA_Achr4P23710_001	Banana	golgi	76.04	75.3
VIT_12s0059g00640.t01	Wine grape	golgi	74.82	75.18
GSMUA_Achr7P00260_001	Banana	golgi	74.57	75.12
VIT_19s0090g00560.t01	Wine grape	cytosol, golgi	74.08	74.81
KRH22570	Soybean	golgi	73.11	73.46
KRH26781	Soybean	golgi, plasma membrane	72.86	73.22
KRH56140	Soybean	golgi, mitochondrion	72.37	72.73
PGSC0003DMT400022537	Potato	plastid	70.42	72.54
KRH25371	Soybean	golgi, mitochondrion	71.88	72.41
Solyc07g064670.2.1	Tomato	nucleus	71.88	72.06
PGSC0003DMT400074517	Potato	cytosol, golgi, mitochondrion, vacuole	71.88	72.06
PGSC0003DMT400057471	Potato	golgi	71.88	72.06
Solyc12g005880.1.1	Tomato	plastid	69.44	71.9
Solyc07g052320.2.1	Tomato	mitochondrion, plastid	71.64	71.81
CDY46836	Canola	plastid	71.15	71.5
AT2G32430.1	Thale cress	golgi	71.39	71.39
AT1G05170.2	Thale cress	cytosol, golgi	70.9	71.25
CDY49507	Canola	plastid	71.39	71.22
Bra005595.1-P	Field mustard	golgi	71.15	71.15
CDY48266	Canola	golgi	71.15	71.15
CDY12206	Canola	golgi	70.66	70.66
PGSC0003DMT400071658	Potato	golgi	66.5	69.74
CDX97371	Canola	cytosol, endoplasmic reticulum	68.22	68.89
AT4G26940.1	Thale cress	endoplasmic reticulum, golgi	68.46	68.8
Bra010422.1-P	Field mustard	cytosol, golgi	67.97	68.47
CDY14294	Canola	cytosol, golgi	67.97	68.47
CDX92791	Canola	cytosol	67.24	68.41
CDY46675	Canola	cytosol	68.46	68.29
EES04570	Sorghum	golgi	66.99	68.16
Bra015395.1-P	Field mustard	plastid	69.44	66.67
Bra019081.1-P	Field mustard	cytosol	62.59	66.32
EER88815	Sorghum	golgi	64.79	66.25
CDY68943	Canola	golgi	53.55	62.04
CDY11037	Canola	golgi, mitochondrion, plastid	54.28	61.84
OQU85173	Sorghum	golgi, nucleus	59.41	61.06
KXG35748	Sorghum	golgi	56.72	58.88
KXG22053	Sorghum	golgi, plastid	55.01	55.42
EES14424	Sorghum	golgi, mitochondrion	47.68	50.65
OQU87975	Sorghum	cytosol	47.92	39.12
EES13774	Sorghum	mitochondrion	33.01	39.02
EER87954	Sorghum	plastid	30.32	35.13
OQU75947	Sorghum	mitochondrion	30.07	33.61
KXG19339	Sorghum	golgi, mitochondrion, plastid	27.14	30.49
EES19194	Sorghum	golgi, peroxisome, plastid	22.98	25.07

Protein Annotations

MapMan:21.4.1.1.5.3	Gene3D:3.90.550.50	EntrezGene:8063024	UniProt:C5WUA8	ncoils:Coil	InterPro:DUF4094
EnsemblPlants:EER91307	ProteinID:EER91307	ProteinID:EER91307.1	GO:GO:0000139	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975
GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008378	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0019538
InterPro:Glyco_trans_31	PFAM:PF01762	PFAM:PF13334	PANTHER:PTHR11214	PANTHER:PTHR11214:SF5	EnsemblPlantsGene:SORBI_3001G183600
unigene:Sbi.7821	TMHMM:TMhelix	UniParc:UPI0001A82311	RefSeq:XP_002464309.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:15636492..15641361

Molecular Weight (calculated)

45637.6 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.382

Length

409 amino acids

Sequence
(BLAST)

001: MSFNKSSRGG GGLGGAAGGG DELVLRGSIS KKWTLLLCLG SFCIGLLFTN RMWTMPEPKE IIRRSTLEVE KMSLVEGDCA PKSIGDAKDV PGEVPRTQDV
101: IQTLDKTISN LEMELASAKA SQESMLNGAP MSESTGKRKY FMVIGINTAF SSRKRRDSVR ATWMPQGERR RKMEEEKGII IRFVIGHSAT PGGILDRAID
201: AEDRKHEDFM RLDHVEGYLE LAAKTKAYFV AAVSMWDAEY YIKVDDDVHV NIATLGNVLA RHRSKPRAYI GCMKSGPVLA QKGVRYHEPE YWKFGEWGNK
301: YFRHATGQLY AISKDLASYI ALNQHVLHKY ANEDVSLGSW FIGLDVEHVD DRRLCCGTTP DCEWKAQAGN VCAASFDWSC SGICKSADRI KEVHQRCGES
401: ENAIWNAKF

Best Arabidopsis Sequence Match ( AT1G05170.2 )
(BLAST)

001: MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL VSEGCNPKAL YQKEVKRDPQ ALFGEVANTH IALQTLDKTI
101: SSLEMELAAA RSVQESLQNG APLSDDMGKK QPQEQRRFLM VVGINTAFSS RKRRDSIRAT WMPQGEKRKR LEEEKGIIIR FVIGHSATTG GILDRAIEAE
201: DRKHGDFLRL DHVEGYLELS GKTKTYFSTA FSMWDADFYV KVDDDVHVNI ATLGETLVRH RKKPRVYIGC MKSGPVLSQK GVRYHEPEYW KFGENGNKYF
301: RHATGQLYAI SRDLASYISI NQHVLHKYAN EDVSLGAWFI GIDVKHIDDR RLCCGTPPDC EWKAQAGNIC VASFDWSCSG ICRSADRIKE VHRRCGEGEK
401: ALWSATF

Arabidopsis Description

B3GALT2Hexosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3U9]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.