Factsheet for GSMUA_Achr4P00940_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G286500.1	Wheat	mitochondrion	75.07	73.33
Os08t0386700-01	Rice	mitochondrion	74.48	73.18
EES13774	Sorghum	mitochondrion	75.07	73.12
TraesCS7A01G293200.1	Wheat	mitochondrion	74.48	72.75
TraesCS7B01G185900.1	Wheat	mitochondrion	74.48	72.75
HORVU7Hr1G063510.5	Barley	mitochondrion	74.48	72.54
KRH53422	Soybean	mitochondrion	72.11	70.85
KRH64518	Soybean	mitochondrion	71.81	70.55
VIT_16s0050g02460.t01	Wine grape	mitochondrion	70.03	69.01
VIT_02s0025g01010.t01	Wine grape	mitochondrion	69.73	68.92
PGSC0003DMT400032067	Potato	cytosol, mitochondrion	63.8	68.69
AT5G53340.1	Thale cress	mitochondrion	67.95	67.75
Solyc08g081920.2.1	Tomato	nucleus	68.25	67.06
Bra003064.1-P	Field mustard	mitochondrion	66.17	66.97
CDX96213	Canola	mitochondrion	66.47	66.87
CDY14386	Canola	mitochondrion	67.06	66.67
CDY49171	Canola	mitochondrion	66.17	66.57
CDY35642	Canola	mitochondrion	66.47	66.27
KRH27862	Soybean	mitochondrion	67.36	66.18
PGSC0003DMT400023412	Potato	mitochondrion	67.95	65.24
Zm00001d050251_P002	Maize	mitochondrion	72.11	59.85
Zm00001d032267_P003	Maize	mitochondrion	67.66	56.16
Bra022647.1-P	Field mustard	mitochondrion	64.99	54.34
GSMUA_Achr8P24200_001	Banana	cytosol	45.4	42.5
GSMUA_Achr8P08420_001	Banana	cytosol	42.43	36.2
GSMUA_Achr5P00690_001	Banana	golgi	42.43	35.66
GSMUA_Achr5P23050_001	Banana	cytosol, golgi, mitochondrion, plastid	41.25	34.75
GSMUA_Achr4P33450_001	Banana	golgi	41.25	34.49
GSMUA_Achr4P23710_001	Banana	golgi	41.84	34.14
GSMUA_Achr8P23200_001	Banana	golgi	43.03	33.96
GSMUA_Achr11P...	Banana	golgi	41.25	33.57
GSMUA_Achr9P30290_001	Banana	cytosol	41.25	32.94
GSMUA_Achr7P00260_001	Banana	golgi	39.47	32.76
GSMUA_Achr7P14080_001	Banana	golgi, plastid	25.22	24.71
GSMUA_Achr10P...	Banana	mitochondrion	21.66	23.7
GSMUA_Achr6P05430_001	Banana	endoplasmic reticulum, nucleus, plastid	26.11	23.4

Protein Annotations

MapMan:18.1.2.1.2	Gene3D:3.90.550.50	ncoils:Coil	InterPro:DUF4094	GO:GO:0000139	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0008378	GO:GO:0009058	GO:GO:0009987	GO:GO:0010405	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0018258	GO:GO:0019538	GO:GO:1990714
EnsemblPlantsGene:GSMUA_Achr4G00940_001	EnsemblPlants:GSMUA_Achr4P00940_001	EnsemblPlants:GSMUA_Achr4T00940_001	InterPro:Glyco_trans_31	UniProt:M0SK11	PFAM:PF01762
PFAM:PF13334	PANTHER:PTHR11214	PANTHER:PTHR11214:SF224	TMHMM:TMhelix	UniParc:UPI0002960358	SEG:seg

Description

Probable beta-1,3-galactosyltransferase 11 [Source:GMGC_GENE;Acc:GSMUA_Achr4G00940_001]

Coordinates

chr4:-:794629..805502

Molecular Weight (calculated)

37628.9 Da

IEP (calculated)

8.678

GRAVY (calculated)

-0.276

Length

337 amino acids

Sequence
(BLAST)

001: MQSRGSGPRP LSRISSIMLS MFATMATFYV AGRLWQDAQN RVYLIKELDR RTGQGQSAIS VDETLKLVAC RHQQKKLAAL EMELAAARHE GFVGQYSSET
101: NGTYSRKRLL VVIGIVTEFG RKKHRDAVRK SWLSTGAAMK KLESEKGVVA RFVIGRSANQ GDGLDREIDD ENSQTKDFIV LDNHVEASEE GPKKTKLFLV
201: YAADTWDAEF YAKVNDDVYV NIDALGTMLA SHLDKPRVYI GCMKSGEVFS ELSHKWFEPE WWKFGDGKSY FRHASGEMFV VSRAVAQFIS INKSILRTFA
301: HDDVSVGSWM IGLDVKHVNE GKLCCSSWSS GAVCAAA

Best Arabidopsis Sequence Match ( AT5G53340.1 )
(BLAST)

001: MARKGSSIRL SSSRISTLLL FMFATFASFY VAGRLWQESQ TRVHLINELD RVTGQGKSAI SVDDTLKIIA CREQKKTLAA LEMELSSARQ EGFVSKSPKL
101: ADGTETKKRP LVVIGIMTSL GNKKKRDAVR QAWMGTGASL KKLESEKGVI ARFVIGRSAN KGDSMDKSID TENSQTDDFI ILDDVVEAPE EASKKVKLFF
201: AYAADRWDAQ FYAKAIDNIY VNIDALGTTL AAHLENPRAY IGCMKSGEVF SEPNHKWYEP EWWKFGDKKA YFRHAYGEMY VITHALARFV SINRDILHSY
301: AHDDVSTGSW FVGLDVKHVD EGKFCCSAWS SEAICAGV

Arabidopsis Description

HPTG1Hydroxyproline O-galactosyltransferase HPGT1 [Source:UniProtKB/Swiss-Prot;Acc:Q94F27]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.