CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g01010.t01	Wine grape	mitochondrion	70.85	71.26
PGSC0003DMT400032067	Potato	cytosol, mitochondrion	62.97	69.01
GSMUA_Achr4P00940_001	Banana	mitochondrion	66.18	67.36
Solyc08g081920.2.1	Tomato	nucleus	67.06	67.06
KRH64518	Soybean	mitochondrion	67.06	67.06
KRH53422	Soybean	mitochondrion	67.06	67.06
EES13774	Sorghum	mitochondrion	62.97	62.43
TraesCS7D01G286500.1	Wheat	mitochondrion	62.39	62.03
TraesCS7A01G293200.1	Wheat	mitochondrion	62.39	62.03
Os08t0386700-01	Rice	mitochondrion	61.81	61.81
TraesCS7B01G185900.1	Wheat	mitochondrion	61.81	61.45
HORVU7Hr1G063510.5	Barley	mitochondrion	61.81	61.27
Zm00001d050251_P002	Maize	mitochondrion	59.18	50.0
Zm00001d032267_P003	Maize	mitochondrion	55.98	47.29
KRH05191	Soybean	mitochondrion, plastid	39.07	42.01
KRH51094	Soybean	cytosol	37.32	37.1
KRH15831	Soybean	mitochondrion	43.15	37.09
KRH53153	Soybean	vacuole	40.52	35.28
KRH16620	Soybean	mitochondrion	40.82	35.26
KRH56140	Soybean	golgi, mitochondrion	41.69	35.14
KRH64756	Soybean	golgi	40.52	35.01
KRH18826	Soybean	endoplasmic reticulum	40.23	34.76
KRH02065	Soybean	golgi, mitochondrion	37.9	34.76
KRH40026	Soybean	golgi	38.48	34.55
KRH25371	Soybean	golgi, mitochondrion	40.82	34.48
KRH22570	Soybean	golgi	40.82	34.4
KRH26781	Soybean	golgi, plasma membrane	40.82	34.4
KRH23776	Soybean	golgi, vacuole	37.03	33.6
KRH55102	Soybean	plastid	25.07	25.44
KRH26222	Soybean	plastid	25.07	25.44
KRH21986	Soybean	mitochondrion	23.91	24.4

Protein Annotations

EntrezGene:100802753	MapMan:18.1.2.1.2	Gene3D:3.90.550.50	EMBL:ACUP02006735	ncoils:Coil	InterPro:DUF4094
EnsemblPlantsGene:GLYMA_11G019300	GO:GO:0000139	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486
GO:GO:0008150	GO:GO:0008152	GO:GO:0008378	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0019538	InterPro:Glyco_trans_31	UniProt:I1LGA9
EnsemblPlants:KRH27862	ProteinID:KRH27862	ProteinID:KRH27862.1	PFAM:PF01762	PFAM:PF13334	PANTHER:PTHR11214
PANTHER:PTHR11214:SF224	TMHMM:TMhelix	UniParc:UPI000233C6D4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:1358050..1363039

Molecular Weight (calculated)

38560.1 Da

IEP (calculated)

8.885

GRAVY (calculated)

-0.311

Length

343 amino acids

Sequence
(BLAST)

001: MRSRGSQNRL SGDSFGSRVS ALMLAMIATM ATVYVAGRLW QDAESRAYFI EELEKRTGQG QSAVSVDDTL KVTACREQQK KLSVLEMELA AARQEGFVPK
101: RLPGNHGKHP TKKELLVVGV MTTFGRKKNQ EAIRKAWMPT GTPMRKLVDK KGIIVRFVIG RSANRGDSLD KEIETESSLT NDFIILDNQV EAPEEKANKI
201: KSFFIYAVSN WDAEFYAKVN DDVYVNLDAL GGVLTSHLDK PRVYIGCMKS GQVFSEPTHK WHEPDWWKFG DGKSYFRHAS GEVYVISKAL VQFISINRFI
301: LRTYAHDDVS IGSWFIGLDV EHLDETKFCC SSRWSPGAIC AAV

Best Arabidopsis Sequence Match ( AT5G53340.1 )
(BLAST)

001: MARKGSSIRL SSSRISTLLL FMFATFASFY VAGRLWQESQ TRVHLINELD RVTGQGKSAI SVDDTLKIIA CREQKKTLAA LEMELSSARQ EGFVSKSPKL
101: ADGTETKKRP LVVIGIMTSL GNKKKRDAVR QAWMGTGASL KKLESEKGVI ARFVIGRSAN KGDSMDKSID TENSQTDDFI ILDDVVEAPE EASKKVKLFF
201: AYAADRWDAQ FYAKAIDNIY VNIDALGTTL AAHLENPRAY IGCMKSGEVF SEPNHKWYEP EWWKFGDKKA YFRHAYGEMY VITHALARFV SINRDILHSY
301: AHDDVSTGSW FVGLDVKHVD EGKFCCSAWS SEAICAGV

Arabidopsis Description

HPTG1Hydroxyproline O-galactosyltransferase HPGT1 [Source:UniProtKB/Swiss-Prot;Acc:Q94F27]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.