CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 3
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05191	Soybean	mitochondrion, plastid	75.94	94.98
VIT_04s0008g06480.t01	Wine grape	golgi	67.67	79.65
Bra007804.1-P	Field mustard	plastid	67.42	77.75
CDY11534	Canola	plastid	67.17	77.68
CDY58927	Canola	cytosol	66.67	77.33
AT2G25300.1	Thale cress	plastid	66.17	76.3
AT4G32120.1	Thale cress	golgi, nucleus, peroxisome	65.41	75.65
Bra011324.1-P	Field mustard	plastid	65.16	74.71
CDX68818	Canola	plastid	65.16	74.5
CDX75222	Canola	plastid	64.91	74.43
Solyc08g029170.2.1	Tomato	plastid	63.41	71.27
Zm00001d045146_P002	Maize	plasma membrane	60.15	67.99
EER87954	Sorghum	plastid	59.9	67.71
Os06t0177300-01	Rice	golgi, mitochondrion, peroxisome, plastid	59.65	67.23
Os06t0176200-01	Rice	golgi, mitochondrion, peroxisome, plastid	59.65	67.23
GSMUA_Achr8P24200_001	Banana	cytosol	59.9	66.39
TraesCS7D01G141100.1	Wheat	cytosol, golgi, mitochondrion, peroxisome, plastid	55.64	62.71
TraesCS7A01G139800.1	Wheat	cytosol, golgi, mitochondrion, peroxisome, plastid	55.64	62.36
TraesCS7B01G041500.1	Wheat	cytosol, golgi, mitochondrion, peroxisome, plastid	55.64	62.01
OQU75947	Sorghum	mitochondrion	56.14	61.2
HORVU7Hr1G028670.1	Barley	cytosol, golgi, plastid	55.89	59.31
KRH53422	Soybean	mitochondrion	37.09	43.15
KRH27862	Soybean	mitochondrion	37.09	43.15
KRH64518	Soybean	mitochondrion	36.34	42.27
KRH26781	Soybean	golgi, plasma membrane	34.59	33.91
KRH25371	Soybean	golgi, mitochondrion	34.34	33.74
KRH22570	Soybean	golgi	34.34	33.66
KRH56140	Soybean	golgi, mitochondrion	34.34	33.66
KRH16620	Soybean	mitochondrion	33.08	33.25
KRH18826	Soybean	endoplasmic reticulum	32.83	33.0
KRH51094	Soybean	cytosol	28.07	32.46
KRH02065	Soybean	golgi, mitochondrion	30.33	32.35
KRH53153	Soybean	vacuole	31.58	31.98
KRH64756	Soybean	golgi	31.58	31.74
KRH23776	Soybean	golgi, vacuole	29.82	31.48
KRH40026	Soybean	golgi	30.08	31.41
KRH21986	Soybean	mitochondrion	20.3	24.11
KRH55102	Soybean	plastid	19.3	22.78
KRH26222	Soybean	plastid	19.05	22.49

Protein Annotations

EntrezGene:100816327	MapMan:18.1.2.1.2	EMBL:ACUP02008662	ncoils:Coil	InterPro:DUF4094	EnsemblPlantsGene:GLYMA_14G113900
GO:GO:0000139	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0008378	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0019538	InterPro:Glyco_trans_31	UniProt:I1M9H0	EnsemblPlants:KRH15831
ProteinID:KRH15831	ProteinID:KRH15831.1	PFAM:PF01762	PFAM:PF13334	PANTHER:PTHR11214	PANTHER:PTHR11214:SF124
TMHMM:TMhelix	UniParc:UPI00023D45A3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:13541927..13548280

Molecular Weight (calculated)

45149.4 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.223

Length

399 amino acids

Sequence
(BLAST)

001: METLPTTTTK RGGARSKPVQ TSKSSLVMAF FSCVAWLYVA GRLWQDAENR NLLASLLKKN SAQRPKVLTV EDKLMVLGCR DLERRIVEAE MELTLAKSQG
101: YLKGQGQRSG SSDRRLLAVI GVYTGFGSKL KRNVFRGSWM PRGDALKKLE ERGVVIRFVI GRSANRGDSL DRNIDEENRT TKDFLILEGH EEAQEELPKK
201: VKTFFSTAVQ NWDADFYVKV DDGIDIDLEG LIELLDRRRG QDGAYVGCMK SGEVISEEGK PWYEPDWWKF GDEKSYFRHA AGSLVIISKN LAQYININSV
301: SLKTYAYDDT SLGSWMMGVQ ATYIDDSRLC CSSIRQGEIP VLMFCSGCFL AVIMFNITFL ITCAHFQTRY APWLDWRITS TFFPTLMGTH TICLKISIS

Best Arabidopsis Sequence Match ( AT4G32120.1 )
(BLAST)

001: MESLPTTVSG KSDRRGRFSK SQNTSKPSLI LAFFSCLAWL YVAGRLWQDA QYRAALNTVL KMNYDQRPKV LTVEDKLVVL GCKDLERRIV ETEMELAQAK
101: SQGYLKKQKS VSSSGKKMLA VIGVYTGFGS HLKRNKFRGS WMPRDDALKK LEERGVVIRF VIGRSANRGD SLDRKIDEEN RATKDFLILE NHEEAQEELP
201: KKVKFFYSAA VQNWDAEFYV KVDDNVDLDL EGMIALLESR RSQDGAYIGC MKSGDVITEE GSQWYEPEWW KFGDDKSYFR HATGSLVILS KNLAQYVNIN
301: SGLLKTYAFD DTTIGSWMIG VQATYIDDNR LCCSSTRQEK VCSMA

Arabidopsis Description

HPGT2Hydroxyproline O-galactosyltransferase HPGT2 [Source:UniProtKB/Swiss-Prot;Acc:Q94A05]
SUBAcon: [peroxisome,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.