Factsheet for TraesCS1D01G100200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G091600.1	Wheat	endoplasmic reticulum, plastid	92.91	95.48
TraesCS1B01G119400.1	Wheat	cytosol, plastid	94.38	95.31
HORVU1Hr1G021620.2	Barley	plastid	84.84	88.75
EES17720	Sorghum	nucleus	56.72	62.53
Zm00001d035783_P001	Maize	nucleus	53.06	61.3
Os05t0150733-00	Rice	cytosol, nucleus, plastid	28.85	60.51
GSMUA_Achr11P...	Banana	cytosol	29.83	48.8
VIT_07s0005g00050.t01	Wine grape	cytosol	25.18	38.43
GSMUA_AchrUn_...	Banana	plastid	18.83	33.77
KRG96418	Soybean	cytosol	21.27	29.59
KRH68159	Soybean	cytosol	21.03	29.35
TraesCS2D01G115700.1	Wheat	cytosol	24.45	29.07
TraesCS1D01G234000.1	Wheat	cytosol	20.78	27.51
TraesCS3D01G444600.1	Wheat	cytosol	20.29	25.38
TraesCS5D01G039100.2	Wheat	plastid	22.0	23.62
TraesCS5D01G141600.1	Wheat	cytosol	24.45	19.08
TraesCS3D01G031400.1	Wheat	cytosol	17.11	16.95
TraesCS4D01G128900.1	Wheat	cytosol, mitochondrion, nucleus	23.47	16.27

Protein Annotations

EnsemblPlants:TraesCS1D01G100200.1	EnsemblPlantsGene:TraesCS1D01G100200	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810
GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PANTHER:PTHR22814	PANTHER:PTHR22814:SF75	PFAM:PF00403	PFscan:PS50846	SEG:seg	SUPFAM:SSF55008
TIGR:cd00371	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:87775863..87777807

Molecular Weight (calculated)

41173.2 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.505

Length

409 amino acids

Sequence
(BLAST)

001: MLFSHALPQD QTLPLCSVLP PFCSPCLLVP PFFTPLLTCT NTDKQSHFPV TSLHSPHSPA MAAAEEGAQP LMYQTVALKV SIHCEGCKKK VKKVLHTIEG
101: VYKTDIDTQQ HKVVVVGNVS VDALVKKLIK TGKHAEPWPE PLPPLSDANP TASGGGGDGG GGGGGGGKKK KKKKNKNKTA EPAAPGAPTA EGAGGSVPPE
201: NHDHAGTCDE ASGDEQPHQV EGGGGGGGDP PKNPGAGDPH DGRAGMVAPF AMTPQGMQPM APSANASGGG GGGKKKKKGK GGNNGNANAN GGDGAGATAH
301: MSPHDAPANP ATGNASQNAP AVVDAGAYPP ATAMSYPGYY GGGAGAGHMP YAMSYSTSHP HRSSAYYHPM AGAAYTGGAG YYYSTAPVSA APGSYYMFSE
401: ENANACSVM

Best Arabidopsis Sequence Match ( AT5G27690.1 )
(BLAST)

001: MDLGTEIKSD TRQEEQRHVF EDYPEPLRYT TWVLRVSIHC EGCKRKIKKI LSKIDGVYTT NIDVKQQKVT VIGNVEPEIL IKKIMKAGRH AELWPTSMEN
101: NINNDCNYQK KPKKDNEETS GDEDDDENNN NNNGGGDVGG GGGGGGGNFD QVKQVVTFVN GQLQPQGDGA PKKKKKKKKK KKSLGNTTVV MEGGGGGGGG
201: GGPPQNDGPP ETVIYSAPQD HHIIHGPPPH LHHHQQQNHP YPTVHSPPRH HPQQMYGPGP GLPPPSFYHT QPQTAPSYTV SYNTVHGPIN NGGNETASYY
301: TAPPSHPTSY YSYEYVDTGY ESPPPEFYSY RSQPSESFES LSEGNPNSCC VM

Arabidopsis Description

HIPP36Heavy metal-associated isoprenylated plant protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q84J88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.